Variant report

Variant	rs283095
Chromosome Location	chr6:118676837-118676838
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 83 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:76)

rs_ID	r²[population]
rs1034247	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12153955	0.82[CEU][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs12154067	0.87[ASN][1000 genomes]
rs12192380	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12194496	0.87[ASN][1000 genomes]
rs12194679	0.87[ASN][1000 genomes]
rs12195048	0.85[CEU][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs12195858	0.87[ASN][1000 genomes]
rs12199508	0.87[ASN][1000 genomes]
rs12201919	0.87[ASN][1000 genomes]
rs12203311	0.82[CEU][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs12203844	0.85[CEU][hapmap];0.87[ASN][1000 genomes]
rs12204855	0.87[ASN][1000 genomes]
rs12216440	1.00[CEU][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13192975	0.87[ASN][1000 genomes]
rs13199882	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes]
rs13206243	0.87[ASN][1000 genomes]
rs169465	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs1889465	1.00[JPT][hapmap]
rs1889466	1.00[JPT][hapmap]
rs2050312	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2050313	1.00[JPT][hapmap]
rs2065707	1.00[JPT][hapmap]
rs2184365	1.00[JPT][hapmap]
rs2356078	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs281859	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs281862	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs281863	1.00[CHB][hapmap]
rs281865	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs281871	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs283043	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs283058	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs283059	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs283060	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs283063	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs283064	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs283090	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs283092	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2883848	1.00[JPT][hapmap]
rs34479025	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35327831	0.87[ASN][1000 genomes]
rs35407905	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs383574	0.80[EUR][1000 genomes]
rs401172	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs406031	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs412995	0.81[EUR][1000 genomes]
rs4245500	1.00[JPT][hapmap]
rs429084	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs430538	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs444666	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs454842	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs456384	1.00[JPT][hapmap]
rs457162	1.00[JPT][hapmap]
rs458588	1.00[JPT][hapmap]
rs465226	1.00[JPT][hapmap]
rs4945614	1.00[JPT][hapmap]
rs4945615	1.00[JPT][hapmap]
rs4945617	1.00[JPT][hapmap]
rs4946328	1.00[JPT][hapmap]
rs67299819	0.87[ASN][1000 genomes]
rs6911094	1.00[JPT][hapmap]
rs6917963	1.00[JPT][hapmap]
rs6921633	1.00[JPT][hapmap]
rs6921657	1.00[JPT][hapmap]
rs6923286	1.00[JPT][hapmap]
rs6933344	1.00[JPT][hapmap]
rs6941759	0.87[ASN][1000 genomes]
rs7742210	0.87[ASN][1000 genomes]
rs7745369	1.00[CEU][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs7766888	0.87[ASN][1000 genomes]
rs7768436	1.00[JPT][hapmap]
rs928598	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs9481772	1.00[JPT][hapmap]
rs9489324	1.00[JPT][hapmap]
rs9489325	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs980916	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530526	chr6:118027339-118718476	Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv532051	chr6:118551027-119044197	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv1020463	chr6:118593028-119146363	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv604554	chr6:118631282-118716318	Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Weak transcription Strong transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv830787	chr6:118631902-118805106	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv1025403	chr6:118635123-119122551	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
7	nsv1025456	chr6:118669672-119058789	Active TSS Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:118673000-118677200	Weak transcription	NHLF	lung
2	chr6:118674400-118677600	Enhancers	Rectal Smooth Muscle	rectum
3	chr6:118674800-118677200	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr6:118675600-118677200	Weak transcription	Skeletal Muscle Female	skeletal muscle

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