Variant report

Variant	rs13206243
Chromosome Location	chr6:118695296-118695297
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 86 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:74)

rs_ID	r²[population]
rs1034247	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12153955	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[ASN][1000 genomes]
rs12154067	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12192216	0.86[ASN][1000 genomes]
rs12192380	1.00[ASN][1000 genomes]
rs12194496	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12194679	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12195048	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12195858	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12199508	1.00[ASN][1000 genomes]
rs12201919	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12203311	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12203844	1.00[CEU][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12204855	1.00[ASN][1000 genomes]
rs12216440	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs13192975	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13199882	1.00[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap]
rs169465	0.87[CEU][hapmap];0.87[CHD][hapmap]
rs1889465	0.85[CHD][hapmap];1.00[JPT][hapmap]
rs1889466	1.00[JPT][hapmap]
rs2050312	1.00[JPT][hapmap]
rs2050313	1.00[JPT][hapmap]
rs2065707	1.00[JPT][hapmap]
rs2184365	0.85[CHD][hapmap];1.00[JPT][hapmap]
rs2356078	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs281859	0.87[CEU][hapmap]
rs281862	0.87[CEU][hapmap];1.00[CHB][hapmap]
rs281865	0.87[CEU][hapmap]
rs281871	1.00[JPT][hapmap]
rs283043	0.87[CEU][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs283058	0.82[CEU][hapmap];0.87[CHD][hapmap];0.85[GIH][hapmap]
rs283059	0.87[ASN][1000 genomes]
rs283060	0.87[CEU][hapmap]
rs283063	0.87[CEU][hapmap]
rs283064	0.87[CEU][hapmap];0.87[CHD][hapmap];0.85[GIH][hapmap]
rs283090	0.87[CEU][hapmap];0.87[CHD][hapmap]
rs283092	0.87[CEU][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs283095	0.87[ASN][1000 genomes]
rs2883848	1.00[JPT][hapmap]
rs34479025	1.00[ASN][1000 genomes]
rs35327831	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35407905	1.00[ASN][1000 genomes]
rs401172	0.85[CEU][hapmap];1.00[JPT][hapmap]
rs406031	0.87[CEU][hapmap]
rs4245500	1.00[JPT][hapmap]
rs429084	1.00[JPT][hapmap]
rs430538	0.87[CHD][hapmap];0.80[GIH][hapmap]
rs444666	0.87[CHD][hapmap];0.80[GIH][hapmap]
rs454842	1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap]
rs456384	0.85[CHD][hapmap];1.00[JPT][hapmap]
rs457162	1.00[JPT][hapmap]
rs458588	0.85[CHD][hapmap];1.00[JPT][hapmap]
rs465226	0.85[CHD][hapmap];1.00[JPT][hapmap]
rs4945614	1.00[JPT][hapmap]
rs4945615	1.00[JPT][hapmap]
rs4945617	1.00[JPT][hapmap]
rs4946328	1.00[JPT][hapmap]
rs67299819	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6911094	0.85[CHD][hapmap];1.00[JPT][hapmap]
rs6917963	1.00[JPT][hapmap]
rs6921633	1.00[JPT][hapmap]
rs6921657	1.00[JPT][hapmap]
rs6923286	1.00[JPT][hapmap]
rs6933344	0.85[CHD][hapmap];1.00[JPT][hapmap]
rs6941759	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[ASN][1000 genomes]
rs7742210	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7745369	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7766888	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7768436	0.85[CHD][hapmap];1.00[JPT][hapmap]
rs928598	1.00[JPT][hapmap]
rs9481772	1.00[JPT][hapmap]
rs9489324	1.00[JPT][hapmap]
rs9489325	0.87[CEU][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs980916	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530526	chr6:118027339-118718476	Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv532051	chr6:118551027-119044197	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv1020463	chr6:118593028-119146363	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv604554	chr6:118631282-118716318	Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Weak transcription Strong transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv830787	chr6:118631902-118805106	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv1025403	chr6:118635123-119122551	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
7	nsv1025456	chr6:118669672-119058789	Active TSS Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
8	nsv1027444	chr6:118687556-119121660	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
9	nsv538428	chr6:118687556-119121660	Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
10	nsv949321	chr6:118692304-119137658	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
11	nsv432958	chr6:118692307-119010307	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
12	nsv604555	chr6:118695049-118856822	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:118688200-118700200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:118691400-118700400	Enhancers	Fetal Heart	heart
3	chr6:118692200-118699000	Weak transcription	Psoas Muscle	Psoas
4	chr6:118694200-118699600	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr6:118694800-118695600	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr6:118694800-118696000	Enhancers	Left Ventricle	heart
7	chr6:118694800-118698200	Weak transcription	Skeletal Muscle Female	skeletal muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links