Variant report

Variant	rs6923342
Chromosome Location	chr6:163790797-163790798
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:163788145..163792575-chr6:163834513..163836469,4	K562	blood:
2	chr6:163787459..163789359-chr6:163790484..163793224,2	K562	blood:

Variant related genes	Relation type
ENSG00000270419	Chromatin interaction
ENSG00000112531	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs58129080	1.00[AMR][1000 genomes]
rs6904749	1.00[AMR][1000 genomes]
rs6915890	1.00[AMR][1000 genomes]
rs73787621	1.00[AMR][1000 genomes]
rs73787628	1.00[AMR][1000 genomes]
rs73787630	1.00[AMR][1000 genomes]
rs7748535	1.00[AMR][1000 genomes]
rs9458785	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932127	chr6:163000261-163950870	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1022610	chr6:163591786-163814041	Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv534621	chr6:163731741-163950870	Bivalent/Poised TSS Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:163777400-163791400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr6:163778400-163790800	Weak transcription	Right Atrium	heart
3	chr6:163783800-163791800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr6:163784000-163791000	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr6:163787600-163791800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr6:163788000-163791000	Weak transcription	Brain Cingulate Gyrus	brain
7	chr6:163789000-163790800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr6:163789000-163790800	Weak transcription	Fetal Muscle Trunk	muscle
9	chr6:163789000-163791600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr6:163789600-163791000	Enhancers	Brain Substantia Nigra	brain
11	chr6:163789600-163792600	Enhancers	Brain Hippocampus Middle	brain
12	chr6:163789800-163791400	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr6:163789800-163791600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
14	chr6:163789800-163791800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr6:163790000-163791200	Enhancers	Monocytes-CD14+_RO01746	blood
16	chr6:163790200-163791000	Enhancers	Left Ventricle	heart
17	chr6:163790200-163791400	Enhancers	Primary monocytes fromperipheralblood	blood
18	chr6:163790400-163791400	Weak transcription	Brain Angular Gyrus	brain
19	chr6:163790400-163791400	Weak transcription	Brain Anterior Caudate	brain
20	chr6:163790600-163791000	Enhancers	Right Ventricle	heart
21	chr6:163790600-163791200	Enhancers	Spleen	Spleen

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