Variant report

Variant	rs9458785
Chromosome Location	chr6:163734047-163734048
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:163718713..163720911-chr6:163732842..163734711,2	MCF-7	breast:
2	chr6:163732876..163734590-chr6:163745076..163747152,2	MCF-7	breast:
3	chr6:163733010..163737483-chr6:163739253..163742400,4	MCF-7	breast:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs58129080	1.00[AMR][1000 genomes]
rs6904749	1.00[AMR][1000 genomes]
rs6915890	1.00[AMR][1000 genomes]
rs6923342	1.00[AMR][1000 genomes]
rs73787621	1.00[AMR][1000 genomes]
rs73787628	1.00[AMR][1000 genomes]
rs73787630	1.00[AMR][1000 genomes]
rs7748535	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932127	chr6:163000261-163950870	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1022610	chr6:163591786-163814041	Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv605188	chr6:163697439-163772096	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv534621	chr6:163731741-163950870	Bivalent/Poised TSS Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:163721600-163739400	Weak transcription	Right Ventricle	heart
2	chr6:163722600-163734400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr6:163722800-163739600	Weak transcription	Right Atrium	heart
4	chr6:163724400-163739400	Weak transcription	Left Ventricle	heart
5	chr6:163728000-163738000	Weak transcription	Fetal Heart	heart
6	chr6:163731000-163735200	Enhancers	Brain Substantia Nigra	brain
7	chr6:163731600-163735200	Enhancers	Brain Hippocampus Middle	brain
8	chr6:163731600-163742600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr6:163731800-163735000	Weak transcription	Fetal Muscle Leg	muscle
10	chr6:163732000-163749600	Weak transcription	Spleen	Spleen
11	chr6:163732200-163734800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr6:163732400-163735800	Enhancers	Brain Inferior Temporal Lobe	brain
13	chr6:163733200-163734200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr6:163733400-163734400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr6:163733400-163734600	Weak transcription	Brain Angular Gyrus	brain
16	chr6:163733400-163735000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr6:163733600-163735000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr6:163733600-163735200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr6:163733600-163735200	Weak transcription	Psoas Muscle	Psoas
20	chr6:163733600-163735200	Weak transcription	NH-A	brain
21	chr6:163733800-163734200	Weak transcription	Brain Anterior Caudate	brain
22	chr6:163733800-163734200	Weak transcription	Brain Cingulate Gyrus	brain
23	chr6:163733800-163734400	Weak transcription	Cortex derived primary cultured neurospheres	brain
24	chr6:163734000-163741600	Weak transcription	A549	lung

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