Variant report
| Variant | rs6923548 |
|---|---|
| Chromosome Location | chr6:88140643-88140644 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:88136188..88139146-chr6:88139445..88141590,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:13)
| rs_ID | r2[population] |
|---|---|
| rs16878996 | 1.00[YRI][hapmap] |
| rs16879362 | 0.84[AFR][1000 genomes] |
| rs16879376 | 1.00[YRI][hapmap] |
| rs4132445 | 1.00[YRI][hapmap] |
| rs6454619 | 0.84[AFR][1000 genomes] |
| rs6454620 | 0.84[AFR][1000 genomes] |
| rs6904958 | 0.84[AFR][1000 genomes] |
| rs6905002 | 0.84[AFR][1000 genomes] |
| rs6905250 | 0.84[AFR][1000 genomes] |
| rs6905289 | 0.84[AFR][1000 genomes] |
| rs6910090 | 0.84[AFR][1000 genomes] |
| rs6936320 | 0.84[AFR][1000 genomes] |
| rs7738798 | 1.00[YRI][hapmap] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1018155 | chr6:88049729-88272862 | Strong transcription Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 18 gene(s) | inside rSNPs | diseases |
| 2 | nsv830722 | chr6:88054186-88223625 | Enhancers Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 18 gene(s) | inside rSNPs | diseases |
| 3 | nsv1031961 | chr6:88110401-88367006 | Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 21 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
