Variant report

Variant	rs7738798
Chromosome Location	chr6:88314813-88314814
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:88313437..88315295-chr6:88331275..88333243,2	K562	blood:
2	chr6:88313946..88315719-chr6:88317737..88320586,2	K562	blood:
3	chr6:88313795..88316259-chr6:88331275..88334158,3	K562	blood:
4	chr6:88300267..88302133-chr6:88313231..88315132,2	MCF-7	breast:
5	chr6:88313970..88315547-chr6:88315693..88317201,2	K562	blood:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs16879376	1.00[YRI][hapmap]
rs4132445	1.00[YRI][hapmap]
rs6923548	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031961	chr6:88110401-88367006	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv1031460	chr6:88153079-88410050	Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv1026482	chr6:88164934-88409728	Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
4	nsv1027706	chr6:88168987-88409728	Genic enhancers Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:88300400-88320800	Weak transcription	Spleen	Spleen
2	chr6:88300400-88323400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr6:88300600-88315800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr6:88300600-88320000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr6:88300600-88321800	Weak transcription	Lung	lung
6	chr6:88300600-88323400	Weak transcription	Gastric	stomach
7	chr6:88300600-88391200	Weak transcription	Colonic Mucosa	Colon
8	chr6:88300800-88320600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr6:88300800-88323600	Weak transcription	Aorta	Aorta
10	chr6:88301000-88315600	Weak transcription	NH-A	brain
11	chr6:88301000-88316400	Weak transcription	Pancreas	Pancrea
12	chr6:88301000-88321000	Weak transcription	Brain Angular Gyrus	brain
13	chr6:88301000-88321000	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr6:88301000-88323600	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr6:88301000-88330200	Weak transcription	Right Ventricle	heart
16	chr6:88301000-88347200	Weak transcription	Small Intestine	intestine
17	chr6:88301200-88316200	Weak transcription	Skeletal Muscle Male	skeletal muscle
18	chr6:88301200-88320800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr6:88301200-88320800	Weak transcription	Placenta Amnion	Placenta Amnion
20	chr6:88301200-88323400	Weak transcription	Thymus	Thymus
21	chr6:88301200-88385000	Weak transcription	Colon Smooth Muscle	Colon
22	chr6:88301400-88320800	Weak transcription	Cortex derived primary cultured neurospheres	brain
23	chr6:88301400-88321000	Weak transcription	Brain Hippocampus Middle	brain
24	chr6:88301400-88322400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
25	chr6:88301400-88338400	Weak transcription	NHLF	lung
26	chr6:88301400-88354400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
27	chr6:88301400-88354600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
28	chr6:88301600-88320800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr6:88301800-88319800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr6:88302000-88347400	Weak transcription	Brain Cingulate Gyrus	brain
31	chr6:88302000-88354400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
32	chr6:88302000-88354600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
33	chr6:88302800-88318800	Weak transcription	HepG2	liver
34	chr6:88305000-88398800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
35	chr6:88305200-88316200	Weak transcription	K562	blood
36	chr6:88305200-88329000	Weak transcription	HSMMtube	muscle
37	chr6:88305400-88315800	Weak transcription	Brain Inferior Temporal Lobe	brain
38	chr6:88305400-88315800	Weak transcription	Rectal Smooth Muscle	rectum
39	chr6:88305400-88316000	Weak transcription	Primary hematopoietic stem cells	blood
40	chr6:88305400-88316000	Weak transcription	GM12878-XiMat	blood
41	chr6:88305400-88316200	Weak transcription	H9 Cell Line	embryonic stem cell
42	chr6:88305400-88317000	Weak transcription	Osteobl	bone
43	chr6:88305400-88317800	Weak transcription	Primary B cells from cord blood	blood
44	chr6:88305400-88320800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
45	chr6:88305400-88320800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
46	chr6:88305600-88315600	Weak transcription	Duodenum Smooth Muscle	Duodenum
47	chr6:88305600-88316000	Weak transcription	HUVEC	blood vessel
48	chr6:88305600-88316200	Weak transcription	Rectal Mucosa Donor 29	rectum
49	chr6:88305600-88320800	Weak transcription	Fetal Kidney	kidney
50	chr6:88305600-88320800	Weak transcription	Fetal Lung	lung

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