Variant report

Variant	rs6924528
Chromosome Location	chr6:76548895-76548896
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1280049	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1280050	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1280051	0.80[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1280052	0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1280053	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1280054	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1280055	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1280056	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1280057	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1280058	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13202519	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1322549	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1335043	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34090650	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3778007	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3798426	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3798427	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3798429	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4476795	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6914716	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6932992	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7742567	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7767675	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs910679	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9341539	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9343325	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9343327	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9359141	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9359147	0.87[ASN][1000 genomes]
rs9360954	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9766905	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022428	chr6:76023118-76575620	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	48 gene(s)	inside rSNPs	diseases
2	nsv538312	chr6:76023118-76575620	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	48 gene(s)	inside rSNPs	diseases
3	nsv1019328	chr6:76154751-76604197	Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
4	nsv538314	chr6:76154751-76604197	Enhancers Strong transcription Active TSS Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
5	nsv1021090	chr6:76306100-76759397	Weak transcription Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
6	nsv538318	chr6:76306100-76759397	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
7	nsv1032961	chr6:76343575-76788852	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
8	nsv932201	chr6:76365548-77219650	Enhancers Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
9	nsv1028340	chr6:76410921-76960225	Flanking Bivalent TSS/Enh Strong transcription Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
10	nsv538319	chr6:76410921-76960225	Strong transcription Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
11	nsv933587	chr6:76545612-76550368	Strong transcription Weak transcription	n/a	n/a	inside rSNPs	diseases
12	nsv970338	chr6:76547672-76552731	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:72 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:76520200-76576400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr6:76521800-76571000	Weak transcription	Gastric	stomach
3	chr6:76522000-76558800	Weak transcription	Ovary	ovary
4	chr6:76522200-76554200	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr6:76522600-76559000	Weak transcription	Fetal Kidney	kidney
6	chr6:76523800-76569000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr6:76525600-76550200	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr6:76527200-76558800	Weak transcription	Small Intestine	intestine
9	chr6:76528400-76550400	Weak transcription	Brain Hippocampus Middle	brain
10	chr6:76532800-76553000	Weak transcription	HepG2	liver
11	chr6:76533200-76559400	Weak transcription	Colon Smooth Muscle	Colon
12	chr6:76534200-76572400	Weak transcription	Brain Anterior Caudate	brain
13	chr6:76534400-76556600	Weak transcription	Pancreatic Islets	Pancreatic Islet
14	chr6:76536200-76552000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
15	chr6:76538200-76559200	Weak transcription	Pancreas	Pancrea
16	chr6:76539400-76572400	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr6:76540800-76552800	Weak transcription	Rectal Smooth Muscle	rectum
18	chr6:76541000-76590600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
19	chr6:76541200-76572600	Weak transcription	HSMMtube	muscle
20	chr6:76541400-76554600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr6:76541400-76558400	Weak transcription	Stomach Mucosa	stomach
22	chr6:76541400-76559200	Weak transcription	Osteobl	bone
23	chr6:76541400-76572400	Weak transcription	Brain Cingulate Gyrus	brain
24	chr6:76541600-76551800	Weak transcription	HSMM	muscle
25	chr6:76541600-76553600	Weak transcription	H9 Cell Line	embryonic stem cell
26	chr6:76541600-76558800	Weak transcription	Muscle Satellite Cultured Cells	--
27	chr6:76541600-76559400	Weak transcription	NH-A	brain
28	chr6:76541800-76558600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr6:76543000-76551800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr6:76543000-76558800	Weak transcription	Left Ventricle	heart
31	chr6:76543000-76568800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr6:76543000-76569200	Weak transcription	Lung	lung
33	chr6:76543000-76615000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
34	chr6:76543200-76550000	Weak transcription	Brain Angular Gyrus	brain
35	chr6:76543200-76551800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr6:76543200-76566600	Weak transcription	HMEC	breast
37	chr6:76543800-76549800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr6:76543800-76550200	Weak transcription	HUES64 Cell Line	embryonic stem cell
39	chr6:76543800-76559400	Weak transcription	NHDF-Ad	bronchial
40	chr6:76544000-76550400	Weak transcription	Duodenum Smooth Muscle	Duodenum
41	chr6:76544000-76550600	Weak transcription	Brain Substantia Nigra	brain
42	chr6:76544000-76583200	Weak transcription	Cortex derived primary cultured neurospheres	brain
43	chr6:76544200-76549800	Weak transcription	Placenta	Placenta
44	chr6:76544200-76550400	Weak transcription	HUVEC	blood vessel
45	chr6:76544200-76550400	Weak transcription	NHEK	skin
46	chr6:76544200-76551800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr6:76544200-76572600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
48	chr6:76544400-76549200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
49	chr6:76544400-76550200	Weak transcription	Liver	Liver
50	chr6:76544400-76558800	Weak transcription	Sigmoid Colon	Sigmoid Colon

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