Variant report
| Variant | rs6925362 |
|---|---|
| Chromosome Location | chr6:72294350-72294351 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:8)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:8 , 50 per page) page:
1
| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | POLR2A | chr6:72294350-72294472 | H1-hESC | embryonic stem cell: | n/a | n/a |
| 2 | POLR2A | chr6:72293989-72294633 | MCF-7 | breast: | n/a | n/a |
| 3 | POLR2A | chr6:72294060-72294452 | MCF-7 | breast: | n/a | n/a |
| 4 | POLR2A | chr6:72294342-72294480 | H1-hESC | embryonic stem cell: | n/a | n/a |
| 5 | POLR2A | chr6:72294187-72294452 | ProgFib | skin: | n/a | n/a |
| 6 | POLR2A | chr6:72294280-72294444 | K562 | blood: | n/a | n/a |
| 7 | POLR2A | chr6:72294192-72294449 | H1-hESC | embryonic stem cell: | n/a | n/a |
| 8 | POLR2A | chr6:72294101-72294451 | MCF-7 | breast: | n/a | n/a |
| No data |
(count:2 , 50 per page) page:
1
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000211530 | TF binding region |
| KRT19P1 | TF binding region |
| ENSG00000171345 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:34)
| rs_ID | r2[population] |
|---|---|
| rs1032166 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs12663567 | 0.81[ASN][1000 genomes] |
| rs1386192 | 0.81[ASN][1000 genomes] |
| rs1486606 | 0.81[ASN][1000 genomes] |
| rs1486607 | 0.81[ASN][1000 genomes] |
| rs1486610 | 0.81[ASN][1000 genomes] |
| rs272213 | 0.86[CEU][hapmap] |
| rs4361579 | 0.81[ASN][1000 genomes] |
| rs4449595 | 0.81[ASN][1000 genomes] |
| rs6453556 | 0.81[ASN][1000 genomes] |
| rs6908161 | 0.81[ASN][1000 genomes] |
| rs6917926 | 0.81[ASN][1000 genomes] |
| rs6918255 | 0.81[ASN][1000 genomes] |
| rs6923050 | 0.81[ASN][1000 genomes] |
| rs747549 | 0.81[ASN][1000 genomes] |
| rs9341328 | 0.81[ASN][1000 genomes] |
| rs9341329 | 0.81[ASN][1000 genomes] |
| rs9341331 | 0.81[ASN][1000 genomes] |
| rs9342854 | 0.81[ASN][1000 genomes] |
| rs9342855 | 0.81[ASN][1000 genomes] |
| rs9342856 | 0.81[ASN][1000 genomes] |
| rs9342857 | 0.81[ASN][1000 genomes] |
| rs9351832 | 0.83[ASN][1000 genomes] |
| rs9351833 | 0.81[ASN][1000 genomes] |
| rs9351834 | 0.81[ASN][1000 genomes] |
| rs9358964 | 0.89[CHB][hapmap] |
| rs9358965 | 0.81[ASN][1000 genomes] |
| rs9358966 | 0.81[ASN][1000 genomes] |
| rs9360467 | 0.81[ASN][1000 genomes] |
| rs9360468 | 0.81[ASN][1000 genomes] |
| rs9360469 | 0.81[ASN][1000 genomes] |
| rs9360470 | 0.81[ASN][1000 genomes] |
| rs9360471 | 0.81[ASN][1000 genomes] |
| rs9360473 | 0.81[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv830685 | chr6:72244007-72410757 | Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:72289400-72295400 | Weak transcription | H1 Derived Mesenchymal Stem Cells | ES cell derived |
