Variant report

Variant	rs6925689
Chromosome Location	chr6:126865884-126865885
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs1155938	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1155939	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1159619	0.92[AFR][1000 genomes]
rs1340952	0.83[EUR][1000 genomes]
rs1340953	0.84[EUR][1000 genomes]
rs1490384	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1490385	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1490387	0.93[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs1490388	0.93[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs1538172	0.87[AFR][1000 genomes]
rs1538956	0.89[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs1826189	0.94[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs1844593	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1907067	0.93[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs2045258	0.85[AFR][1000 genomes]
rs2050644	0.93[AFR][1000 genomes]
rs3861455	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3905044	0.86[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs4053271	0.93[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs4243491	0.91[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4339479	0.85[EUR][1000 genomes]
rs4380768	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4626447	0.89[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs4629707	0.85[EUR][1000 genomes]
rs4895808	0.87[AFR][1000 genomes]
rs4895813	0.86[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs6907898	0.83[AFR][1000 genomes]
rs6911485	0.83[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs6913430	0.83[EUR][1000 genomes]
rs6921183	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7738135	0.92[AFR][1000 genomes]
rs7738836	0.83[EUR][1000 genomes]
rs8180649	0.81[EUR][1000 genomes]
rs853961	0.81[EUR][1000 genomes]
rs853962	0.81[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs853965	0.81[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs853985	0.81[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs853986	0.81[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs853987	0.81[EUR][1000 genomes]
rs864937	0.81[EUR][1000 genomes]
rs864938	0.81[EUR][1000 genomes]
rs9375446	0.93[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs9375447	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9375450	0.81[EUR][1000 genomes]
rs9388489	0.85[AFR][1000 genomes]
rs9388500	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9388507	0.86[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs9388509	0.81[EUR][1000 genomes]
rs9401876	0.85[AFR][1000 genomes]
rs9401885	0.93[AFR][1000 genomes]
rs9401888	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021636	chr6:126792916-127022489	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1026498	chr6:126812609-127397240	Weak transcription Bivalent Enhancer Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:126863600-126867400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr6:126863600-126867800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr6:126863600-126867800	Weak transcription	Colon Smooth Muscle	Colon
4	chr6:126864000-126866200	Weak transcription	Fetal Intestine Small	intestine
5	chr6:126864600-126866200	Weak transcription	Fetal Intestine Large	intestine

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