Variant report

Variant	rs1155939
Chromosome Location	chr6:126866133-126866134
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs1155938	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1159619	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes]
rs1340952	0.90[EUR][1000 genomes]
rs1340953	0.91[EUR][1000 genomes]
rs1490384	0.99[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1490385	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1490387	0.96[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs1490388	0.96[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs1538172	0.90[AFR][1000 genomes]
rs1538956	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs1826189	0.97[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs1844593	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1907067	0.96[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs2045258	0.87[AFR][1000 genomes]
rs2050644	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes]
rs3861455	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs3905044	0.89[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs4053271	0.96[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs4243491	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4339479	0.92[EUR][1000 genomes]
rs4380768	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4626447	0.91[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs4629707	0.92[EUR][1000 genomes]
rs4895808	0.90[AFR][1000 genomes]
rs4895813	0.89[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs6907898	0.81[CEU][hapmap];1.00[CHB][hapmap];0.88[YRI][hapmap];0.86[AFR][1000 genomes]
rs6911485	0.86[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs6913430	0.90[EUR][1000 genomes]
rs6918725	0.82[EUR][1000 genomes]
rs6921183	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6925689	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7738135	0.94[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs7738836	0.90[EUR][1000 genomes]
rs7743860	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs8180649	0.88[EUR][1000 genomes]
rs853961	0.92[CEU][hapmap];1.00[CHB][hapmap];0.88[EUR][1000 genomes]
rs853962	0.83[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs853965	0.83[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs853985	0.83[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs853986	0.83[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs853987	0.88[EUR][1000 genomes]
rs864937	0.88[EUR][1000 genomes]
rs864938	0.88[EUR][1000 genomes]
rs9375442	0.89[CEU][hapmap];1.00[CHB][hapmap]
rs9375446	0.96[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs9375447	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9375450	0.82[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs9388487	1.00[CHB][hapmap]
rs9388489	0.87[AFR][1000 genomes]
rs9388500	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9388507	0.89[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs9388509	0.88[EUR][1000 genomes]
rs9401876	0.87[AFR][1000 genomes]
rs9401885	0.96[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs9401888	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9491624	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021636	chr6:126792916-127022489	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1026498	chr6:126812609-127397240	Weak transcription Bivalent Enhancer Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:126863600-126867400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr6:126863600-126867800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr6:126863600-126867800	Weak transcription	Colon Smooth Muscle	Colon
4	chr6:126864000-126866200	Weak transcription	Fetal Intestine Small	intestine
5	chr6:126864600-126866200	Weak transcription	Fetal Intestine Large	intestine

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