Variant report

Variant	rs9388487
Chromosome Location	chr6:126678268-126678269
allele	A/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:126671151..126673096-chr6:126677103..126678889,2	K562	blood:
2	chr6:126660263..126662394-chr6:126676712..126679398,2	K562	blood:

Variant related genes	Relation type
ENSG00000203760	Chromatin interaction

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10457478	1.00[ASN][1000 genomes]
rs1159619	0.89[CEU][hapmap];1.00[CHB][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12202204	1.00[ASN][1000 genomes]
rs1361108	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1361262	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1490384	1.00[ASN][1000 genomes]
rs1490387	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1490388	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1538172	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1578060	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1591805	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1602278	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17754780	0.96[CEU][hapmap];1.00[CHB][hapmap];0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1907067	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2027299	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2039735	0.84[EUR][1000 genomes]
rs2045258	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2050644	0.89[CEU][hapmap];1.00[CHB][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2130603	0.81[EUR][1000 genomes]
rs2326387	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34539692	1.00[ASN][1000 genomes]
rs4053271	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4422634	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4895807	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4895808	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6907898	0.96[CEU][hapmap];1.00[CHB][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6919397	0.96[CEU][hapmap];1.00[CHB][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7738135	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9321065	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9375435	0.92[CEU][hapmap];1.00[CHB][hapmap];0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9375442	0.88[CEU][hapmap];1.00[CHB][hapmap];0.82[EUR][1000 genomes]
rs9375446	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9388486	0.96[CEU][hapmap];1.00[CHB][hapmap];0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9388489	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9388490	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9398803	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9398804	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9401876	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9401885	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9491624	1.00[CHB][hapmap];0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:126663600-126678800	Weak transcription	Thymus	Thymus
2	chr6:126663600-126682800	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr6:126663800-126678400	Weak transcription	Fetal Lung	lung
4	chr6:126663800-126686400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr6:126665400-126702200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr6:126665400-126702200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr6:126671600-126679400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr6:126671600-126679800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr6:126671600-126680600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr6:126671800-126681000	Weak transcription	Monocytes-CD14+_RO01746	blood
11	chr6:126675400-126681000	Weak transcription	A549	lung
12	chr6:126677000-126678600	ZNF genes & repeats	Dnd41	blood
13	chr6:126678000-126678800	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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