Variant report

Variant	rs17754780
Chromosome Location	chr6:126664333-126664334
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:126663288..126665538-chr6:126670979..126673352,2	K562	blood:

Extended variants
information (count: 41 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10457478	1.00[ASN][1000 genomes]
rs1159619	0.92[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12202204	1.00[ASN][1000 genomes]
rs1361108	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1361262	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1490384	1.00[ASN][1000 genomes]
rs1490387	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1490388	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1538172	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1578060	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1591805	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1602278	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1907067	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2027299	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2039735	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2045258	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2050644	0.92[CEU][hapmap];1.00[CHB][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2130603	0.86[EUR][1000 genomes]
rs2326387	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34539692	1.00[ASN][1000 genomes]
rs4053271	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4422634	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4895807	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4895808	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59698523	0.85[EUR][1000 genomes]
rs6907898	0.90[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];0.98[TSI][hapmap];0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6919397	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[GIH][hapmap];0.95[MEX][hapmap];0.98[TSI][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7738135	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9321065	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9375435	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.97[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9375442	0.92[CEU][hapmap];1.00[CHB][hapmap];0.87[EUR][1000 genomes]
rs9375446	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9388486	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.95[LWK][hapmap];0.90[MEX][hapmap];0.94[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9388487	0.96[CEU][hapmap];1.00[CHB][hapmap];0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9388489	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9388490	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9398803	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9398804	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9401876	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9401885	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9491624	1.00[CHB][hapmap];0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs17754780	FABP7	cis	cerebellum	SCAN
rs17754780	C6orf174	cis	cerebellum	SCAN

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:126662200-126675400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr6:126662600-126664800	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr6:126662600-126665200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr6:126662600-126672000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr6:126662800-126672200	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr6:126663000-126672600	Weak transcription	Primary neutrophils fromperipheralblood	blood
7	chr6:126663000-126672800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr6:126663200-126664400	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr6:126663200-126667400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr6:126663200-126667400	Weak transcription	Fetal Thymus	thymus
11	chr6:126663200-126669000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr6:126663200-126669200	Weak transcription	Primary monocytes fromperipheralblood	blood
13	chr6:126663200-126673000	Weak transcription	NHEK	skin
14	chr6:126663200-126673200	Weak transcription	HSMM	muscle
15	chr6:126663200-126674200	Weak transcription	NH-A	brain
16	chr6:126663200-126674800	Weak transcription	NHLF	lung
17	chr6:126663400-126667600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr6:126663400-126669600	Weak transcription	Fetal Intestine Large	intestine
19	chr6:126663400-126670400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
20	chr6:126663400-126673200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr6:126663400-126674600	Weak transcription	Primary hematopoietic stem cells	blood
22	chr6:126663600-126664400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr6:126663600-126666200	Active TSS	GM12878-XiMat	blood
24	chr6:126663600-126678800	Weak transcription	Thymus	Thymus
25	chr6:126663600-126682800	Weak transcription	H1 Cell Line	embryonic stem cell
26	chr6:126663800-126664800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr6:126663800-126665000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr6:126663800-126665000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr6:126663800-126665200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
30	chr6:126663800-126665400	Enhancers	HUES6 Cell Line	embryonic stem cell
31	chr6:126663800-126667600	Weak transcription	Monocytes-CD14+_RO01746	blood
32	chr6:126663800-126670400	Weak transcription	HUVEC	blood vessel
33	chr6:126663800-126673200	Weak transcription	Brain Germinal Matrix	brain
34	chr6:126663800-126676800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr6:126663800-126677200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr6:126663800-126678400	Weak transcription	Fetal Lung	lung
37	chr6:126663800-126686400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr6:126664000-126664400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
39	chr6:126664000-126664800	Enhancers	K562	blood
40	chr6:126664000-126673600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
41	chr6:126664000-126673800	Weak transcription	HMEC	breast
42	chr6:126664000-126676800	Weak transcription	HepG2	liver
43	chr6:126664200-126665200	Enhancers	Dnd41	blood
44	chr6:126664200-126665400	Weak transcription	HUES48 Cell Line	embryonic stem cell
45	chr6:126664200-126667400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
46	chr6:126664200-126667600	Weak transcription	HUES64 Cell Line	embryonic stem cell
47	chr6:126664200-126670600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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