Variant report

Variant	rs6919397
Chromosome Location	chr6:126659043-126659044
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:126656566..126658110-chr6:126658624..126660154,2	K562	blood:

Extended variants
information (count: 41 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10457478	1.00[ASN][1000 genomes]
rs1159619	0.92[CEU][hapmap];1.00[CHB][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12202204	1.00[ASN][1000 genomes]
rs1361108	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1361262	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1490384	1.00[ASN][1000 genomes]
rs1490387	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1490388	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1538172	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1578060	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1591805	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1602278	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17754780	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[GIH][hapmap];0.95[MEX][hapmap];0.98[TSI][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1907067	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2027299	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2039735	0.89[EUR][1000 genomes]
rs2045258	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2050644	0.92[CEU][hapmap];1.00[CHB][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2130603	0.85[EUR][1000 genomes]
rs2326387	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34539692	1.00[ASN][1000 genomes]
rs4053271	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4422634	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4895807	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4895808	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59698523	0.85[EUR][1000 genomes]
rs6907898	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[GIH][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7738135	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9321065	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9375435	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9375442	0.92[CEU][hapmap];1.00[CHB][hapmap];0.87[EUR][1000 genomes]
rs9375446	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9388486	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9388487	0.96[CEU][hapmap];1.00[CHB][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9388489	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9388490	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9398803	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9398804	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9401876	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9401885	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9491624	1.00[CHB][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs6919397	FABP7	cis	cerebellum	SCAN
rs6919397	C6orf174	cis	cerebellum	SCAN

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:126657600-126660800	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr6:126658000-126659200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr6:126658000-126659200	Enhancers	Primary neutrophils fromperipheralblood	blood
4	chr6:126658000-126659200	Enhancers	Skeletal Muscle Female	skeletal muscle
5	chr6:126658600-126660800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr6:126658600-126660800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr6:126658600-126660800	Weak transcription	Fetal Lung	lung
8	chr6:126658800-126660800	Enhancers	Primary T cells from cord blood	blood
9	chr6:126658800-126660800	Weak transcription	Placenta	Placenta
10	chr6:126659000-126659400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr6:126659000-126660200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr6:126659000-126660800	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr6:126659000-126660800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr6:126659000-126660800	Weak transcription	Adipose Nuclei	Adipose
15	chr6:126659000-126660800	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr6:126659000-126660800	Weak transcription	Hela-S3	cervix
17	chr6:126659000-126660800	Enhancers	Monocytes-CD14+_RO01746	blood
18	chr6:126659000-126660800	Weak transcription	NHDF-Ad	bronchial
19	chr6:126659000-126661000	Weak transcription	Psoas Muscle	Psoas

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