Variant report

Variant	rs12202204
Chromosome Location	chr6:126686407-126686408
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10457478	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1159619	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs1361108	1.00[ASN][1000 genomes]
rs1361262	1.00[ASN][1000 genomes]
rs1490384	1.00[ASN][1000 genomes]
rs1490387	1.00[ASN][1000 genomes]
rs1490388	1.00[ASN][1000 genomes]
rs1538172	1.00[ASN][1000 genomes]
rs1578060	1.00[ASN][1000 genomes]
rs1591805	1.00[ASN][1000 genomes]
rs1602278	1.00[ASN][1000 genomes]
rs17754780	1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[ASN][1000 genomes]
rs1907067	1.00[ASN][1000 genomes]
rs2045258	1.00[ASN][1000 genomes]
rs2050644	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2326387	1.00[ASN][1000 genomes]
rs34539692	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4053271	1.00[ASN][1000 genomes]
rs4422634	1.00[ASN][1000 genomes]
rs4895807	1.00[ASN][1000 genomes]
rs4895808	1.00[ASN][1000 genomes]
rs6907898	1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[ASN][1000 genomes]
rs6919397	1.00[CHB][hapmap];0.90[GIH][hapmap];1.00[ASN][1000 genomes]
rs7738135	1.00[ASN][1000 genomes]
rs9321065	1.00[ASN][1000 genomes]
rs9375435	1.00[CHB][hapmap];0.90[GIH][hapmap];1.00[ASN][1000 genomes]
rs9375442	1.00[CHB][hapmap]
rs9375446	1.00[ASN][1000 genomes]
rs9388486	1.00[CHB][hapmap];0.92[GIH][hapmap];1.00[ASN][1000 genomes]
rs9388487	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs9388489	1.00[ASN][1000 genomes]
rs9388490	1.00[ASN][1000 genomes]
rs9398803	1.00[ASN][1000 genomes]
rs9401885	1.00[ASN][1000 genomes]
rs9491624	1.00[CHB][hapmap];1.00[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs12202204	SAMD3	cis	parietal	SCAN
rs12202204	C6orf174	cis	cerebellum	SCAN

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:126665400-126702200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr6:126665400-126702200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr6:126678600-126694000	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr6:126678800-126702400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr6:126681200-126688600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr6:126681600-126689200	Weak transcription	Primary hematopoietic stem cells	blood
7	chr6:126681600-126694400	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr6:126681600-126696600	Weak transcription	Monocytes-CD14+_RO01746	blood
9	chr6:126681600-126697800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr6:126683800-126686800	Weak transcription	Dnd41	blood
11	chr6:126686400-126686600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr6:126686400-126686800	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr6:126686400-126687000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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