Variant report

Variant	rs9375435
Chromosome Location	chr6:126661858-126661859
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10457478	1.00[ASN][1000 genomes]
rs1159619	0.88[CEU][hapmap];1.00[CHB][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12202204	1.00[ASN][1000 genomes]
rs1361108	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1361262	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1490384	1.00[ASN][1000 genomes]
rs1490387	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1490388	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1538172	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1578060	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1591805	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1602278	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17754780	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.97[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1907067	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2027299	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2039735	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2045258	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2050644	0.88[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2130603	0.84[EUR][1000 genomes]
rs2326387	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34539692	1.00[ASN][1000 genomes]
rs4053271	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4422634	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4895807	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4895808	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59698523	0.84[EUR][1000 genomes]
rs6907898	0.90[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.97[GIH][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];0.95[TSI][hapmap];0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6919397	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7738135	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9321065	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9375442	0.88[CEU][hapmap];1.00[CHB][hapmap];0.85[EUR][1000 genomes]
rs9375446	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9388486	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];0.95[LWK][hapmap];0.90[MEX][hapmap];0.94[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9388487	0.92[CEU][hapmap];1.00[CHB][hapmap];0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9388489	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9388490	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9398803	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9398804	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9401876	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9401885	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9491624	1.00[CHB][hapmap];0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3379370	chr6:126660674-126663387	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs9375435	FABP7	cis	cerebellum	SCAN
rs9375435	C6orf174	cis	cerebellum	SCAN

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:126660600-126662400	Active TSS	iPS-20b Cell Line	embryonic stem cell
2	chr6:126660600-126663800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr6:126660800-126662000	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr6:126660800-126662000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr6:126660800-126662000	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr6:126660800-126662000	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
7	chr6:126660800-126662000	Active TSS	Primary hematopoietic stem cells short term culture	blood
8	chr6:126660800-126662000	Active TSS	Fetal Brain Female	brain
9	chr6:126660800-126662000	Active TSS	HMEC	breast
10	chr6:126660800-126662200	Active TSS	H1 Cell Line	embryonic stem cell
11	chr6:126660800-126662200	Active TSS	HUES64 Cell Line	embryonic stem cell
12	chr6:126660800-126662200	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr6:126660800-126662200	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr6:126660800-126662200	Active TSS	Muscle Satellite Cultured Cells	--
15	chr6:126660800-126662200	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr6:126660800-126662200	Active TSS	Aorta	Aorta
17	chr6:126660800-126662200	Active TSS	Colonic Mucosa	Colon
18	chr6:126660800-126662200	Active TSS	Fetal Kidney	kidney
19	chr6:126660800-126662200	Active TSS	GM12878-XiMat	blood
20	chr6:126660800-126662200	Active TSS	HSMM	muscle
21	chr6:126660800-126662200	Active TSS	NH-A	brain
22	chr6:126660800-126662200	Active TSS	NHEK	skin
23	chr6:126660800-126662400	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr6:126660800-126662400	Active TSS	iPS-18 Cell Line	embryonic stem cell
25	chr6:126660800-126662400	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr6:126660800-126662400	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr6:126660800-126662400	Active TSS	A549	lung
28	chr6:126660800-126662600	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr6:126660800-126662600	Active TSS	NHDF-Ad	bronchial
30	chr6:126660800-126662800	Active TSS	ES-I3 Cell Line	embryonic stem cell
31	chr6:126660800-126662800	Active TSS	H9 Cell Line	embryonic stem cell
32	chr6:126660800-126662800	Active TSS	K562	blood
33	chr6:126660800-126662800	Active TSS	NHLF	lung
34	chr6:126660800-126663600	Active TSS	HUES48 Cell Line	embryonic stem cell
35	chr6:126661000-126662000	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr6:126661000-126662000	Active TSS	Fetal Heart	heart
37	chr6:126661000-126662000	Active TSS	Ovary	ovary
38	chr6:126661000-126662000	Active TSS	Thymus	Thymus
39	chr6:126661000-126662200	Active TSS	ES-WA7 Cell Line	embryonic stem cell
40	chr6:126661000-126662200	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr6:126661000-126662200	Active TSS	iPS-15b Cell Line	embryonic stem cell
42	chr6:126661000-126662200	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
43	chr6:126661000-126662200	Active TSS	Esophagus	oesophagus
44	chr6:126661000-126662200	Active TSS	Right Ventricle	heart
45	chr6:126661000-126662200	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
46	chr6:126661000-126662200	Active TSS	HSMMtube	muscle
47	chr6:126661000-126662400	Active TSS	Hela-S3	cervix
48	chr6:126661000-126662600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
49	chr6:126661000-126662800	Active TSS	Psoas Muscle	Psoas
50	chr6:126661000-126663000	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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