Variant report

Variant	rs2130603
Chromosome Location	chr6:126826819-126826820
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs1159619	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1361108	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1361262	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1490384	0.84[EUR][1000 genomes]
rs1490387	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1490388	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1538172	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1578060	0.89[EUR][1000 genomes]
rs1591805	0.81[AMR][1000 genomes]
rs1602278	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17754780	0.86[EUR][1000 genomes]
rs1907067	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2027299	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2039735	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2045258	0.86[EUR][1000 genomes]
rs2050644	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2326387	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4053271	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4422634	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4895807	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4895808	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6907898	0.85[EUR][1000 genomes]
rs6919397	0.85[EUR][1000 genomes]
rs7738135	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9321065	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9375435	0.84[EUR][1000 genomes]
rs9375442	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9375446	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9388486	0.85[EUR][1000 genomes]
rs9388487	0.81[EUR][1000 genomes]
rs9388489	0.88[EUR][1000 genomes]
rs9388490	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9398803	0.81[EUR][1000 genomes]
rs9398804	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9401876	0.85[EUR][1000 genomes]
rs9401885	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9491624	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021636	chr6:126792916-127022489	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1026498	chr6:126812609-127397240	Weak transcription Bivalent Enhancer Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:126825800-126844800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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