Variant report

Variant	rs6927375
Chromosome Location	chr6:24081369-24081370
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10046359	0.83[AFR][1000 genomes]
rs10806982	0.82[AFR][1000 genomes]
rs12216082	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1277135	0.80[AFR][1000 genomes]
rs1277137	0.82[AFR][1000 genomes]
rs1290088	0.82[AFR][1000 genomes]
rs1402405	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1402406	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2683639	0.81[AFR][1000 genomes]
rs2683640	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6914382	0.82[AFR][1000 genomes]
rs6922435	0.81[AFR][1000 genomes]
rs6930187	0.82[AFR][1000 genomes]
rs7762311	0.83[AFR][1000 genomes]
rs9460965	0.82[AFR][1000 genomes]
rs9689955	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029930	chr6:23481989-24289948	Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv883479	chr6:23804221-24090497	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:24076600-24083800	Weak transcription	Pancreas	Pancrea
2	chr6:24077600-24082600	Enhancers	Fetal Brain Male	brain
3	chr6:24078000-24082200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr6:24079400-24081600	Enhancers	Brain Germinal Matrix	brain
5	chr6:24079600-24081600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr6:24079800-24081800	Enhancers	Cortex derived primary cultured neurospheres	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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