Variant report

Variant	rs6927786
Chromosome Location	chr6:71708542-71708543
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10945278	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11757574	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12524190	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12529422	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2347632	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2347633	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4479893	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4506005	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs55870610	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs56291137	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72920735	0.91[EUR][1000 genomes]
rs7451863	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7746949	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7774025	0.90[EUR][1000 genomes]
rs9283838	0.99[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9294883	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv966627	chr6:71699692-71726851	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:71695600-71716600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr6:71707600-71708600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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