Variant report

Variant	rs6927886
Chromosome Location	chr6:54293024-54293025
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10080851	0.87[EUR][1000 genomes]
rs1508635	1.00[CEU][hapmap]
rs17755505	0.87[EUR][1000 genomes]
rs17828461	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs17828521	0.87[EUR][1000 genomes]
rs3736352	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs3736353	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs3777646	0.81[EUR][1000 genomes]
rs3777647	0.81[EUR][1000 genomes]
rs3822894	0.87[EUR][1000 genomes]
rs41413844	0.87[EUR][1000 genomes]
rs55868486	0.85[EUR][1000 genomes]
rs56257351	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs57614124	0.91[EUR][1000 genomes]
rs57677324	0.87[EUR][1000 genomes]
rs58204168	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs58555206	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs58969244	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs59502546	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs60299436	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61162221	0.87[EUR][1000 genomes]
rs67321849	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6902402	0.87[EUR][1000 genomes]
rs6907037	0.87[EUR][1000 genomes]
rs6926710	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72959309	0.87[EUR][1000 genomes]
rs72965255	0.91[EUR][1000 genomes]
rs7746042	0.87[EUR][1000 genomes]
rs9464068	1.00[CEU][hapmap]
rs9474821	0.91[EUR][1000 genomes]
rs9474827	0.87[EUR][1000 genomes]
rs9474829	0.87[EUR][1000 genomes]
rs9474831	0.87[EUR][1000 genomes]
rs949469	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067663	chr6:53796341-54449718	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv529158	chr6:53796341-54449718	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv528901	chr6:54290333-54337130	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:54291200-54293800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr6:54291600-54293200	Enhancers	GM12878-XiMat	blood
3	chr6:54291600-54293600	Enhancers	NHEK	skin
4	chr6:54291600-54296200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr6:54291800-54293600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr6:54291800-54293600	Enhancers	Osteobl	bone
7	chr6:54291800-54294600	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr6:54292000-54297000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr6:54292200-54295600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr6:54293000-54294200	Weak transcription	NHDF-Ad	bronchial
11	chr6:54293000-54296200	Weak transcription	Muscle Satellite Cultured Cells	--

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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