Variant report

Variant	rs57614124
Chromosome Location	chr6:54257491-54257492
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:54250978..54253931-chr6:54256831..54259813,2	MCF-7	breast:

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10080851	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1508634	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1508635	0.84[ASN][1000 genomes]
rs17755505	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17828461	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17828521	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3736352	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3736353	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3777636	0.84[AFR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3777646	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3777647	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3822894	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs41413844	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs55868486	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56257351	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs57677324	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs58204168	0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs58555206	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs58969244	0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs59502546	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs60299436	0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61162221	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs67321849	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6902402	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6907037	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6926710	0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6927886	0.91[EUR][1000 genomes]
rs72959309	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72965255	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7739948	0.91[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs7746042	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7758586	0.92[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs7763022	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7767253	0.84[ASN][1000 genomes]
rs9395950	0.92[AFR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9464067	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9464068	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9464069	0.89[ASN][1000 genomes]
rs9474821	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9474827	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9474829	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9474831	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs949469	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067663	chr6:53796341-54449718	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv529158	chr6:53796341-54449718	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv885888	chr6:54132353-54266032	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:54256400-54258000	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr6:54257400-54257600	ZNF genes & repeats	Rectal Mucosa Donor 31	rectum

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