Variant report

Variant	rs9464069
Chromosome Location	chr6:54256680-54256681
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10080851	0.88[ASN][1000 genomes]
rs10456174	0.83[CEU][hapmap]
rs10456681	0.83[CEU][hapmap]
rs10456682	0.80[CEU][hapmap]
rs10484642	0.83[CEU][hapmap]
rs10498797	0.83[CEU][hapmap]
rs10948812	0.85[CEU][hapmap]
rs10948813	0.83[CEU][hapmap]
rs10948814	0.83[CEU][hapmap]
rs12193891	0.83[CEU][hapmap]
rs12205456	0.83[CEU][hapmap]
rs12209701	0.83[CEU][hapmap]
rs12661397	0.83[CEU][hapmap]
rs12663327	0.83[CEU][hapmap]
rs1508634	0.81[CHD][hapmap];0.85[JPT][hapmap]
rs1508635	0.81[CHD][hapmap];0.85[JPT][hapmap]
rs17755505	0.90[CHB][hapmap];0.84[CHD][hapmap];0.90[JPT][hapmap];0.88[ASN][1000 genomes]
rs17828461	0.89[CHB][hapmap];0.90[JPT][hapmap];0.87[ASN][1000 genomes]
rs17828521	0.90[CHB][hapmap];0.84[CHD][hapmap];0.90[JPT][hapmap];0.85[ASN][1000 genomes]
rs3736352	0.90[CHB][hapmap];0.84[CHD][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs3736353	0.90[CHB][hapmap];0.84[CHD][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs3777636	0.85[JPT][hapmap]
rs3777640	0.83[CEU][hapmap]
rs3777646	0.85[ASN][1000 genomes]
rs3777647	0.90[CHB][hapmap];0.90[JPT][hapmap];0.85[ASN][1000 genomes]
rs3822894	0.90[CHB][hapmap];0.90[JPT][hapmap];0.87[ASN][1000 genomes]
rs41413844	0.90[CHB][hapmap];0.84[CHD][hapmap];0.90[JPT][hapmap];0.87[ASN][1000 genomes]
rs55868486	0.88[ASN][1000 genomes]
rs57614124	0.89[ASN][1000 genomes]
rs57677324	0.87[ASN][1000 genomes]
rs61162221	0.86[ASN][1000 genomes]
rs6902402	0.90[CHB][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs6907037	0.89[ASN][1000 genomes]
rs72959309	0.85[ASN][1000 genomes]
rs72965255	0.89[ASN][1000 genomes]
rs7746042	0.90[CHB][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs7750024	0.83[CEU][hapmap]
rs7758586	0.81[CHD][hapmap]
rs9296755	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9370292	0.94[CEU][hapmap];0.85[CHB][hapmap];0.90[JPT][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9382325	0.83[CEU][hapmap]
rs9382326	0.88[CEU][hapmap]
rs9382330	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9395943	0.83[CEU][hapmap]
rs9395950	0.81[CHD][hapmap]
rs9464068	0.85[JPT][hapmap]
rs9464070	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9474811	0.83[EUR][1000 genomes]
rs9474815	0.94[CEU][hapmap];0.85[JPT][hapmap];0.93[EUR][1000 genomes]
rs9474819	0.83[CEU][hapmap]
rs9474821	0.87[ASN][1000 genomes]
rs9474827	0.90[CHB][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs9474829	0.90[CHB][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs9474831	0.90[CHB][hapmap];0.84[CHD][hapmap];0.90[JPT][hapmap];0.89[ASN][1000 genomes]
rs949469	0.90[CHB][hapmap];0.90[JPT][hapmap];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067663	chr6:53796341-54449718	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv529158	chr6:53796341-54449718	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv885888	chr6:54132353-54266032	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:54212000-54257400	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr6:54256400-54256800	Enhancers	Hela-S3	cervix
3	chr6:54256400-54258000	Weak transcription	Rectal Mucosa Donor 29	rectum

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