Variant report

Variant	rs9464070
Chromosome Location	chr6:54257147-54257148
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:54250978..54253931-chr6:54256831..54259813,2	MCF-7	breast:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1508634	0.90[CHB][hapmap];0.92[CHD][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs1508635	0.90[CHB][hapmap];0.92[CHD][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs17755505	0.85[CHD][hapmap];0.81[JPT][hapmap]
rs17828461	0.81[JPT][hapmap]
rs17828521	0.85[CHD][hapmap];0.81[JPT][hapmap]
rs3736352	0.84[CHD][hapmap];0.85[JPT][hapmap]
rs3736353	0.85[CHD][hapmap];0.85[JPT][hapmap]
rs3777636	0.90[CHB][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs3777647	0.81[JPT][hapmap]
rs3822894	0.81[JPT][hapmap]
rs41413844	0.85[CHD][hapmap];0.81[JPT][hapmap]
rs6902402	0.86[JPT][hapmap]
rs7739948	0.83[ASN][1000 genomes]
rs7746042	0.86[JPT][hapmap]
rs7758586	0.80[CHB][hapmap];0.92[CHD][hapmap];0.90[JPT][hapmap];0.83[ASN][1000 genomes]
rs7763022	0.88[ASN][1000 genomes]
rs7767253	0.89[ASN][1000 genomes]
rs9296755	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9370292	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9382326	0.83[CEU][hapmap]
rs9382330	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9395950	0.90[CHB][hapmap];0.92[CHD][hapmap];0.90[JPT][hapmap];0.88[ASN][1000 genomes]
rs9464067	0.89[ASN][1000 genomes]
rs9464068	0.90[CHB][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs9464069	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9474811	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9474815	1.00[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.82[YRI][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9474827	0.86[JPT][hapmap]
rs9474829	0.85[JPT][hapmap]
rs9474831	0.85[CHD][hapmap];0.81[JPT][hapmap]
rs949469	0.81[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067663	chr6:53796341-54449718	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv529158	chr6:53796341-54449718	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv885888	chr6:54132353-54266032	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:54212000-54257400	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr6:54256400-54258000	Weak transcription	Rectal Mucosa Donor 29	rectum

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