Variant report

Variant	rs6928073
Chromosome Location	chr6:73358186-73358187
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10943050	0.89[YRI][hapmap]
rs12194741	0.90[YRI][hapmap]
rs12195259	0.89[YRI][hapmap]
rs12196826	0.80[YRI][hapmap]
rs12199549	0.90[YRI][hapmap]
rs12201380	0.90[YRI][hapmap]
rs12204139	1.00[YRI][hapmap]
rs12210850	0.90[YRI][hapmap]
rs12212818	0.90[YRI][hapmap]
rs12374631	1.00[YRI][hapmap]
rs13208048	0.90[ASN][1000 genomes]
rs1328857	0.92[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.98[ASN][1000 genomes]
rs17692715	1.00[YRI][hapmap]
rs7746067	0.84[ASW][hapmap];0.90[CEU][hapmap];0.93[CHB][hapmap];0.91[CHD][hapmap];0.83[GIH][hapmap];0.81[JPT][hapmap];0.86[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];0.94[TSI][hapmap];0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9342960	0.85[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.99[ASN][1000 genomes]
rs9350467	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023809	chr6:73157813-73477997	Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv538303	chr6:73157813-73477997	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv3347486	chr6:73283590-73445976	Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:73334400-73358800	Weak transcription	HSMM	muscle
2	chr6:73336200-73359000	Weak transcription	Primary hematopoietic stem cells	blood
3	chr6:73336200-73362800	Weak transcription	Primary B cells from cord blood	blood
4	chr6:73338600-73358600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr6:73346800-73358800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr6:73352000-73358600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr6:73355000-73358600	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr6:73355200-73362200	Weak transcription	Psoas Muscle	Psoas
9	chr6:73356600-73359000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr6:73356800-73358800	Weak transcription	Osteobl	bone
11	chr6:73357200-73358600	Weak transcription	NHEK	skin
12	chr6:73357400-73358600	Weak transcription	HMEC	breast
13	chr6:73357400-73361000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr6:73357800-73358400	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr6:73357800-73358600	Enhancers	GM12878-XiMat	blood
16	chr6:73357800-73358800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr6:73358000-73358400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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