Variant report

Variant	rs7746067
Chromosome Location	chr6:73360098-73360099
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:73351149..73353791-chr6:73359149..73361413,2	K562	blood:
2	chr6:73357444..73360283-chr6:73362570..73365237,3	K562	blood:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs12193274	1.00[YRI][hapmap]
rs13208048	0.90[ASN][1000 genomes]
rs1328857	0.86[CHB][hapmap];0.94[CHD][hapmap];0.81[JPT][hapmap];0.84[MEX][hapmap];0.96[ASN][1000 genomes]
rs6928073	0.84[ASW][hapmap];0.90[CEU][hapmap];0.93[CHB][hapmap];0.91[CHD][hapmap];0.83[GIH][hapmap];0.81[JPT][hapmap];0.86[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];0.94[TSI][hapmap];0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9342960	0.81[JPT][hapmap];0.97[ASN][1000 genomes]
rs9350467	0.90[CEU][hapmap];0.93[CHB][hapmap];0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023809	chr6:73157813-73477997	Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv538303	chr6:73157813-73477997	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv3347486	chr6:73283590-73445976	Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:73336200-73362800	Weak transcription	Primary B cells from cord blood	blood
2	chr6:73355200-73362200	Weak transcription	Psoas Muscle	Psoas
3	chr6:73357400-73361000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr6:73358400-73361000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr6:73358600-73360200	Enhancers	NHEK	skin
6	chr6:73358600-73360600	Enhancers	Fetal Heart	heart
7	chr6:73358600-73360800	Enhancers	Skeletal Muscle Female	skeletal muscle
8	chr6:73358600-73360800	Enhancers	HMEC	breast
9	chr6:73358600-73362600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr6:73358800-73360200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr6:73358800-73360200	Enhancers	Osteobl	bone
12	chr6:73358800-73360400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr6:73358800-73360800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr6:73358800-73360800	Enhancers	Cortex derived primary cultured neurospheres	brain
15	chr6:73358800-73362200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr6:73358800-73362600	Enhancers	HSMM	muscle
17	chr6:73358800-73362600	Enhancers	HSMMtube	muscle
18	chr6:73359000-73360400	Enhancers	A549	lung
19	chr6:73359000-73360400	Enhancers	Hela-S3	cervix
20	chr6:73359000-73360800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr6:73359000-73362200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr6:73359200-73360400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr6:73359400-73360400	Weak transcription	NHLF	lung
24	chr6:73359600-73360400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr6:73359600-73360600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
26	chr6:73359600-73360600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr6:73359600-73362000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr6:73359600-73362800	Enhancers	HUES48 Cell Line	embryonic stem cell
29	chr6:73359600-73373000	Weak transcription	Primary hematopoietic stem cells	blood
30	chr6:73359600-73398800	Weak transcription	Primary B cells from peripheral blood	blood
31	chr6:73359800-73360200	Enhancers	Muscle Satellite Cultured Cells	--
32	chr6:73359800-73360600	Weak transcription	Placenta Amnion	Placenta Amnion
33	chr6:73359800-73360800	Enhancers	Skeletal Muscle Male	skeletal muscle
34	chr6:73359800-73386800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
35	chr6:73360000-73360200	Enhancers	NHDF-Ad	bronchial
36	chr6:73360000-73360400	Active TSS	Aorta	Aorta
37	chr6:73360000-73360400	Flanking Active TSS	NH-A	brain
38	chr6:73360000-73360600	Enhancers	HUES6 Cell Line	embryonic stem cell
39	chr6:73360000-73360800	Enhancers	iPS-20b Cell Line	embryonic stem cell
40	chr6:73360000-73360800	Flanking Active TSS	GM12878-XiMat	blood

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