Variant report

Variant	rs6928563
Chromosome Location	chr6:49392845-49392846
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10948505	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10948506	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10948507	0.88[ASN][1000 genomes]
rs11964378	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11970105	0.87[EUR][1000 genomes]
rs12189789	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12190697	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12191171	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12197340	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12197394	0.87[EUR][1000 genomes]
rs12198507	0.88[ASN][1000 genomes]
rs12202875	0.88[ASN][1000 genomes]
rs12204398	0.88[ASN][1000 genomes]
rs12204617	0.88[ASN][1000 genomes]
rs12206768	0.88[ASN][1000 genomes]
rs12208117	0.88[ASN][1000 genomes]
rs12208221	0.88[ASN][1000 genomes]
rs12214010	0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12214609	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17663557	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17663627	0.88[ASN][1000 genomes]
rs2127756	0.88[ASN][1000 genomes]
rs2127759	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2229385	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57912929	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7755833	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7756016	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7774623	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024959	chr6:49290141-49652124	Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv1021136	chr6:49295037-49631278	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv915806	chr6:49313295-49430422	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:49382000-49396600	Weak transcription	Aorta	Aorta
2	chr6:49383400-49399800	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr6:49384200-49398400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr6:49389600-49401200	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr6:49391000-49401200	Weak transcription	Left Ventricle	heart
6	chr6:49392400-49396000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr6:49392400-49398800	Weak transcription	Primary T cells fromperipheralblood	blood
8	chr6:49392400-49403800	Weak transcription	Right Ventricle	heart
9	chr6:49392600-49396600	Weak transcription	Primary T cells from cord blood	blood
10	chr6:49392600-49397800	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr6:49392800-49400400	Weak transcription	Ovary	ovary

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