Variant report

Variant	rs6928581
Chromosome Location	chr6:4773086-4773087
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MXI1	chr6:4773056-4774462	H1-hESC	embryonic stem cell:	n/a	chr6:4773624-4773633
2	TEAD4	chr6:4772958-4773364	H1-hESC	embryonic stem cell:	n/a	n/a
3	MAX	chr6:4773033-4773749	H1-hESC	embryonic stem cell:	n/a	chr6:4773622-4773633 chr6:4773619-4773634 chr6:4773624-4773633
4	SP4	chr6:4773019-4773428	H1-hESC	embryonic stem cell:	n/a	n/a
5	POLR2A	chr6:4772810-4773745	H1-hESC	embryonic stem cell:	n/a	n/a
6	TBP	chr6:4772914-4773767	H1-hESC	embryonic stem cell:	n/a	n/a
7	MYC	chr6:4773075-4773949	H1-hESC	embryonic stem cell:	n/a	chr6:4773622-4773633 chr6:4773619-4773634 chr6:4773624-4773633
8	EP300	chr6:4772980-4773423	H1-hESC	embryonic stem cell:	n/a	n/a
9	ATF2	chr6:4772867-4773525	H1-hESC	embryonic stem cell:	n/a	n/a
10	POLR2A	chr6:4773017-4773468	H1-hESC	embryonic stem cell:	n/a	n/a
11	RAD21	chr6:4772903-4773394	H1-hESC	embryonic stem cell:	n/a	n/a
12	MAX	chr6:4772966-4773971	H1-hESC	embryonic stem cell:	n/a	chr6:4773622-4773633 chr6:4773619-4773634 chr6:4773624-4773633
13	POLR2A	chr6:4773060-4773497	H1-hESC	embryonic stem cell:	n/a	n/a
14	YY1	chr6:4772955-4773370	H1-hESC	embryonic stem cell:	n/a	n/a
15	TCF12	chr6:4773015-4773248	H1-hESC	embryonic stem cell:	n/a	n/a
16	TEAD4	chr6:4772938-4773437	H1-hESC	embryonic stem cell:	n/a	n/a
17	POLR2A	chr6:4772959-4773471	H1-hESC	embryonic stem cell:	n/a	n/a
18	SP1	chr6:4772869-4773439	H1-hESC	embryonic stem cell:	n/a	n/a
19	TAF7	chr6:4772988-4773505	H1-hESC	embryonic stem cell:	n/a	n/a
20	SP1	chr6:4772799-4773456	H1-hESC	embryonic stem cell:	n/a	n/a
21	SIN3AK20	chr6:4773041-4773678	H1-hESC	embryonic stem cell:	n/a	n/a
22	SIN3AK20	chr6:4773019-4773385	H1-hESC	embryonic stem cell:	n/a	n/a
23	TCF12	chr6:4773028-4773226	H1-hESC	embryonic stem cell:	n/a	n/a
24	JUND	chr6:4772928-4773414	H1-hESC	embryonic stem cell:	n/a	n/a
25	CHD2	chr6:4772944-4773375	H1-hESC	embryonic stem cell:	n/a	n/a
26	TAF1	chr6:4773016-4773506	H1-hESC	embryonic stem cell:	n/a	n/a
27	HDAC2	chr6:4772932-4773540	H1-hESC	embryonic stem cell:	n/a	n/a
28	POU5F1	chr6:4772940-4773373	H1-hESC	embryonic stem cell:	n/a	chr6:4772944-4772953
29	SIN3A	chr6:4772779-4776923	H1-hESC	embryonic stem cell:	n/a	chr6:4775707-4775717 chr6:4775835-4775846
30	TAF1	chr6:4772940-4773512	H1-hESC	embryonic stem cell:	n/a	n/a

Variant related genes	Relation type
CDYL	TF binding region

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1265337	0.85[ASN][1000 genomes]
rs17346907	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs233480	1.00[CHB][hapmap]
rs4615435	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59124798	0.82[ASN][1000 genomes]
rs60530811	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61392817	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6929349	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6939203	0.93[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.82[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.85[YRI][hapmap];0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6939607	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs760791	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7746532	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7746925	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3366530	chr6:4471528-4865322	ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	esv3429586	chr6:4719363-4792438	Flanking Active TSS Bivalent Enhancer Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1017938	chr6:4729592-4774914	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1023527	chr6:4729592-5387176	Strong transcription Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
5	esv2422499	chr6:4745428-5073222	Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:4761000-4773200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr6:4769800-4775000	Weak transcription	Aorta	Aorta
3	chr6:4772200-4773200	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
4	chr6:4772600-4773200	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr6:4772600-4773200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr6:4772600-4776200	Active TSS	ES-WA7 Cell Line	embryonic stem cell
7	chr6:4772800-4777200	Active TSS	H1 Cell Line	embryonic stem cell
8	chr6:4772800-4777800	Active TSS	ES-I3 Cell Line	embryonic stem cell
9	chr6:4773000-4773400	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr6:4773000-4774000	Active TSS	HUES6 Cell Line	embryonic stem cell
11	chr6:4773000-4774000	Active TSS	HUES64 Cell Line	embryonic stem cell
12	chr6:4773000-4774200	Active TSS	iPS-15b Cell Line	embryonic stem cell
13	chr6:4773000-4774600	Active TSS	iPS-20b Cell Line	embryonic stem cell
14	chr6:4773000-4777400	Active TSS	HUES48 Cell Line	embryonic stem cell
15	chr6:4773000-4777600	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell

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