Variant report

Variant	rs6929349
Chromosome Location	chr6:4773438-4773439
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1265337	0.85[ASN][1000 genomes]
rs4615435	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59124798	0.82[ASN][1000 genomes]
rs60530811	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61392817	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6928581	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6939203	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6939607	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs760791	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7746925	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3366530	chr6:4471528-4865322	ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	esv3429586	chr6:4719363-4792438	Flanking Active TSS Bivalent Enhancer Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1017938	chr6:4729592-4774914	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1023527	chr6:4729592-5387176	Strong transcription Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
5	esv2422499	chr6:4745428-5073222	Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:4769800-4775000	Weak transcription	Aorta	Aorta
2	chr6:4772600-4776200	Active TSS	ES-WA7 Cell Line	embryonic stem cell
3	chr6:4772800-4777200	Active TSS	H1 Cell Line	embryonic stem cell
4	chr6:4772800-4777800	Active TSS	ES-I3 Cell Line	embryonic stem cell
5	chr6:4773000-4774000	Active TSS	HUES6 Cell Line	embryonic stem cell
6	chr6:4773000-4774000	Active TSS	HUES64 Cell Line	embryonic stem cell
7	chr6:4773000-4774200	Active TSS	iPS-15b Cell Line	embryonic stem cell
8	chr6:4773000-4774600	Active TSS	iPS-20b Cell Line	embryonic stem cell
9	chr6:4773000-4777400	Active TSS	HUES48 Cell Line	embryonic stem cell
10	chr6:4773000-4777600	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
11	chr6:4773200-4775000	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr6:4773200-4777400	Active TSS	H9 Cell Line	embryonic stem cell
13	chr6:4773200-4777400	Active TSS	iPS-18 Cell Line	embryonic stem cell
14	chr6:4773200-4777400	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr6:4773200-4777600	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr6:4773200-4778200	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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