Variant report

Variant	rs6928789
Chromosome Location	chr6:114084492-114084493
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:114017203..114020038-chr6:114083854..114086336,2	MCF-7	breast:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10872106	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11153440	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11153450	0.95[CHB][hapmap];0.94[JPT][hapmap]
rs12204831	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1980375	0.91[CEU][hapmap];0.90[CHB][hapmap]
rs1997216	0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2463311	0.82[ASN][1000 genomes]
rs2498753	0.83[ASN][1000 genomes]
rs2498754	0.82[ASN][1000 genomes]
rs6919507	0.81[CHB][hapmap]
rs7764889	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9372377	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9372379	0.92[CEU][hapmap];0.90[CHB][hapmap]
rs9384883	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9481393	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs954620	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021774	chr6:114063971-114407280	Enhancers Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
2	nsv538422	chr6:114063971-114407280	Genic enhancers Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
3	nsv464023	chr6:114071720-114114057	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
4	nsv604532	chr6:114071720-114114057	Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:114077000-114085000	Weak transcription	Psoas Muscle	Psoas
2	chr6:114077600-114084600	Weak transcription	HSMM	muscle
3	chr6:114080400-114085000	Weak transcription	A549	lung
4	chr6:114083000-114086000	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr6:114083600-114085600	Enhancers	HUVEC	blood vessel
6	chr6:114083800-114084800	Enhancers	NHEK	skin
7	chr6:114083800-114085600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr6:114083800-114085600	Enhancers	Primary hematopoietic stem cells short term culture	blood
9	chr6:114083800-114085600	Enhancers	HMEC	breast
10	chr6:114083800-114085600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
11	chr6:114083800-114085600	Enhancers	Osteobl	bone
12	chr6:114084000-114084800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr6:114084000-114085600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr6:114084000-114085600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr6:114084000-114085600	Enhancers	Placenta	Placenta
16	chr6:114084200-114085200	Enhancers	ES-I3 Cell Line	embryonic stem cell
17	chr6:114084200-114085400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
18	chr6:114084200-114085400	Enhancers	HUES6 Cell Line	embryonic stem cell
19	chr6:114084200-114085400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr6:114084200-114085400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr6:114084200-114085400	Enhancers	Stomach Mucosa	stomach
22	chr6:114084200-114085400	Flanking Active TSS	GM12878-XiMat	blood
23	chr6:114084200-114085400	Enhancers	Hela-S3	cervix
24	chr6:114084200-114085400	Enhancers	NHLF	lung
25	chr6:114084200-114085600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
26	chr6:114084200-114085600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr6:114084200-114085600	Enhancers	NH-A	brain
28	chr6:114084200-114085600	Enhancers	NHDF-Ad	bronchial
29	chr6:114084200-114095800	Weak transcription	Fetal Lung	lung
30	chr6:114084400-114084600	Bivalent Enhancer	Fetal Heart	heart
31	chr6:114084400-114085000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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