Variant report

Variant	rs9481393
Chromosome Location	chr6:114081369-114081370
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10872106	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11153440	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12204831	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1997216	0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2463311	0.82[ASN][1000 genomes]
rs2498753	0.82[ASN][1000 genomes]
rs2498754	0.81[ASN][1000 genomes]
rs6928789	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7764889	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9372377	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9384883	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs954620	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021774	chr6:114063971-114407280	Enhancers Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
2	nsv538422	chr6:114063971-114407280	Genic enhancers Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
3	nsv464023	chr6:114071720-114114057	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
4	nsv604532	chr6:114071720-114114057	Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:114077000-114085000	Weak transcription	Psoas Muscle	Psoas
2	chr6:114077600-114083800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr6:114077600-114084600	Weak transcription	HSMM	muscle
4	chr6:114079200-114081400	Enhancers	Primary neutrophils fromperipheralblood	blood
5	chr6:114080400-114084200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr6:114080400-114085000	Weak transcription	A549	lung
7	chr6:114080600-114083400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr6:114080600-114083600	Weak transcription	HUVEC	blood vessel
9	chr6:114080600-114083800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr6:114080600-114083800	Weak transcription	Fetal Lung	lung
11	chr6:114080600-114083800	Weak transcription	Osteobl	bone
12	chr6:114080600-114084000	Weak transcription	Placenta	Placenta
13	chr6:114080800-114081400	Weak transcription	Primary B cells from cord blood	blood
14	chr6:114080800-114083000	Weak transcription	Primary monocytes fromperipheralblood	blood
15	chr6:114080800-114083400	Weak transcription	GM12878-XiMat	blood
16	chr6:114080800-114083400	Weak transcription	Monocytes-CD14+_RO01746	blood
17	chr6:114080800-114083800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
18	chr6:114080800-114083800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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