Variant report

Variant	rs6928829
Chromosome Location	chr6:166991299-166991300
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs6456095	0.84[EUR][1000 genomes]
rs6910053	0.81[AMR][1000 genomes]
rs7760282	0.84[EUR][1000 genomes]
rs9295354	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3490076	chr6:166727901-167306743	Strong transcription Weak transcription Flanking Active TSS Genic enhancers Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases
2	esv3490077	chr6:166727901-167306743	Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases
3	nsv886941	chr6:166907173-166996991	Strong transcription Weak transcription Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA	5 gene(s)	inside rSNPs	diseases
4	nsv5592	chr6:166958317-167002951	Weak transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1029530	chr6:166977678-167016052	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv605260	chr6:166984094-167455139	Enhancers Strong transcription Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:166974400-166992400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr6:166979400-166996600	Weak transcription	Primary neutrophils fromperipheralblood	blood
3	chr6:166979400-166997600	Weak transcription	Stomach Smooth Muscle	stomach
4	chr6:166981200-166992200	Weak transcription	HSMMtube	muscle
5	chr6:166981800-167002400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr6:166986000-166996400	Weak transcription	Fetal Kidney	kidney
7	chr6:166986200-167002200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr6:166986400-166991600	Weak transcription	Fetal Brain Male	brain
9	chr6:166986600-166994800	Weak transcription	Pancreas	Pancrea
10	chr6:166986600-167001400	Weak transcription	Brain Hippocampus Middle	brain
11	chr6:166986800-166991800	Weak transcription	Fetal Brain Female	brain
12	chr6:166986800-166994800	Weak transcription	Gastric	stomach
13	chr6:166986800-166997800	Weak transcription	Brain Substantia Nigra	brain
14	chr6:166986800-167003000	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr6:166987000-166993600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr6:166987000-166994800	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr6:166987000-166995400	Weak transcription	Spleen	Spleen
18	chr6:166987000-166996600	Weak transcription	Osteobl	bone
19	chr6:166987000-166997200	Weak transcription	Brain Cingulate Gyrus	brain
20	chr6:166987000-167002000	Weak transcription	Duodenum Mucosa	Duodenum
21	chr6:166987200-166991600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr6:166987200-166992400	Weak transcription	Left Ventricle	heart
23	chr6:166987200-166992600	Weak transcription	Fetal Heart	heart
24	chr6:166987200-166995000	Weak transcription	Brain Angular Gyrus	brain
25	chr6:166987200-166997600	Weak transcription	NHLF	lung
26	chr6:166987200-166998400	Weak transcription	NH-A	brain
27	chr6:166987200-167001800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
28	chr6:166987600-166991600	Weak transcription	H1 Cell Line	embryonic stem cell
29	chr6:166987600-166991600	Weak transcription	Fetal Muscle Leg	muscle
30	chr6:166987600-166991800	Weak transcription	Fetal Muscle Trunk	muscle
31	chr6:166987800-166994800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
32	chr6:166987800-166996600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr6:166988800-166991800	Weak transcription	Right Ventricle	heart
34	chr6:166989000-166996600	Weak transcription	Esophagus	oesophagus
35	chr6:166989000-167011400	Weak transcription	Ovary	ovary
36	chr6:166989200-166992800	Weak transcription	HSMM	muscle
37	chr6:166989400-166991600	Weak transcription	Muscle Satellite Cultured Cells	--
38	chr6:166989600-167001800	Weak transcription	Skeletal Muscle Male	skeletal muscle
39	chr6:166989800-166991800	Weak transcription	Skeletal Muscle Female	skeletal muscle
40	chr6:166990000-166993200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr6:166990200-166991600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr6:166990200-166992800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr6:166990600-167001800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
44	chr6:166991000-166991600	Weak transcription	Lung	lung
45	chr6:166991000-166992000	Weak transcription	Fetal Stomach	stomach

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