Variant report

Variant	rs6932700
Chromosome Location	chr6:62982577-62982578
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs16869656	1.00[AMR][1000 genomes]
rs16881176	1.00[AMR][1000 genomes]
rs16881357	1.00[AMR][1000 genomes]
rs16881505	1.00[AMR][1000 genomes]
rs16881604	1.00[AMR][1000 genomes]
rs16881673	1.00[AMR][1000 genomes]
rs16882289	1.00[AMR][1000 genomes]
rs16882384	1.00[AMR][1000 genomes]
rs16882682	1.00[AMR][1000 genomes]
rs1861480	1.00[AMR][1000 genomes]
rs61236933	1.00[AMR][1000 genomes]
rs6934481	1.00[AMR][1000 genomes]
rs73487034	1.00[AMR][1000 genomes]
rs73487041	1.00[AMR][1000 genomes]
rs73488956	1.00[AMR][1000 genomes]
rs73489261	1.00[AMR][1000 genomes]
rs73489274	1.00[AMR][1000 genomes]
rs73489283	1.00[AMR][1000 genomes]
rs73489288	1.00[AMR][1000 genomes]
rs73489300	1.00[AMR][1000 genomes]
rs73491114	1.00[AMR][1000 genomes]
rs73491129	1.00[AMR][1000 genomes]
rs73491151	1.00[AMR][1000 genomes]
rs73491159	1.00[AMR][1000 genomes]
rs7740504	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017249	chr6:62906813-63317382	Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1020677	chr6:62911584-63309663	Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv532025	chr6:62944349-63571677	Enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv916760	chr6:62944661-63290986	Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1034520	chr6:62967960-63057406	Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:62944000-62988200	Weak transcription	Primary B cells from cord blood	blood
2	chr6:62976400-62994400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links