Variant report
| Variant | rs16882289 |
|---|---|
| Chromosome Location | chr6:62929323-62929324 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:30)
| rs_ID | r2[population] |
|---|---|
| rs16869262 | 1.00[AMR][1000 genomes] |
| rs16869656 | 1.00[AMR][1000 genomes] |
| rs16880656 | 0.91[AFR][1000 genomes] |
| rs16881176 | 1.00[AMR][1000 genomes] |
| rs16881357 | 1.00[AMR][1000 genomes] |
| rs16881505 | 1.00[AMR][1000 genomes] |
| rs16881604 | 1.00[AMR][1000 genomes] |
| rs16881673 | 1.00[AMR][1000 genomes] |
| rs16882384 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs16882682 | 1.00[AMR][1000 genomes] |
| rs1861480 | 1.00[AMR][1000 genomes] |
| rs61236933 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs6925699 | 1.00[AMR][1000 genomes] |
| rs6932700 | 1.00[AMR][1000 genomes] |
| rs6934481 | 1.00[AMR][1000 genomes] |
| rs73487034 | 1.00[AMR][1000 genomes] |
| rs73487041 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73487213 | 1.00[AMR][1000 genomes] |
| rs73487217 | 1.00[AMR][1000 genomes] |
| rs73488956 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73489261 | 1.00[AMR][1000 genomes] |
| rs73489274 | 1.00[AMR][1000 genomes] |
| rs73489283 | 1.00[AMR][1000 genomes] |
| rs73489288 | 1.00[AMR][1000 genomes] |
| rs73489300 | 1.00[AMR][1000 genomes] |
| rs73491114 | 1.00[AMR][1000 genomes] |
| rs73491129 | 1.00[AMR][1000 genomes] |
| rs73491151 | 1.00[AMR][1000 genomes] |
| rs73491159 | 1.00[AMR][1000 genomes] |
| rs7740504 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1017249 | chr6:62906813-63317382 | Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 2 | nsv1020677 | chr6:62911584-63309663 | Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 3 | nsv603324 | chr6:62925124-62934455 | Weak transcription ZNF genes & repeats Active TSS | n/a | n/a | inside rSNPs | diseases |
| 4 | nsv603325 | chr6:62925124-62934738 | ZNF genes & repeats Weak transcription Active TSS | n/a | n/a | inside rSNPs | diseases |
| 5 | nsv603330 | chr6:62926037-62934455 | Weak transcription ZNF genes & repeats | n/a | n/a | inside rSNPs | diseases |
| 6 | nsv603339 | chr6:62926139-62934455 | Weak transcription ZNF genes & repeats | n/a | n/a | inside rSNPs | diseases |
| 7 | nsv603343 | chr6:62926297-62934455 | Weak transcription ZNF genes & repeats | n/a | n/a | inside rSNPs | diseases |
| 8 | nsv603344 | chr6:62926297-62934738 | ZNF genes & repeats Weak transcription | n/a | n/a | inside rSNPs | diseases |
| 9 | nsv1021518 | chr6:62927880-62974776 | ZNF genes & repeats Enhancers Strong transcription Weak transcription Genic enhancers | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:62921600-62929600 | Weak transcription | Primary B cells from cord blood | blood |
