Variant report

Variant	rs16869262
Chromosome Location	chr6:62748480-62748481
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 101 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:78)

rs_ID	r²[population]
rs16868143	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16868380	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16868439	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16869656	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16881176	1.00[AMR][1000 genomes]
rs16881357	1.00[AMR][1000 genomes]
rs16881505	1.00[AMR][1000 genomes]
rs16881604	1.00[AMR][1000 genomes]
rs16881673	1.00[AMR][1000 genomes]
rs16882289	1.00[AMR][1000 genomes]
rs16882384	1.00[AMR][1000 genomes]
rs1861480	1.00[AMR][1000 genomes]
rs1931810	1.00[AMR][1000 genomes]
rs35081977	1.00[AMR][1000 genomes]
rs4538689	1.00[AMR][1000 genomes]
rs57817009	1.00[AMR][1000 genomes]
rs59328200	1.00[AMR][1000 genomes]
rs59498632	1.00[AMR][1000 genomes]
rs60760931	1.00[AMR][1000 genomes]
rs60880752	1.00[AMR][1000 genomes]
rs61236933	1.00[AMR][1000 genomes]
rs61337484	1.00[AMR][1000 genomes]
rs6912048	1.00[AMR][1000 genomes]
rs6915522	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6925699	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6927065	1.00[AMR][1000 genomes]
rs73476690	1.00[AMR][1000 genomes]
rs73476693	1.00[AMR][1000 genomes]
rs73476698	1.00[AMR][1000 genomes]
rs73478915	1.00[AMR][1000 genomes]
rs73478925	1.00[AMR][1000 genomes]
rs73478943	1.00[AMR][1000 genomes]
rs73478965	1.00[AMR][1000 genomes]
rs73481173	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73482836	1.00[AMR][1000 genomes]
rs73483208	1.00[AMR][1000 genomes]
rs73485387	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73485395	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73487034	1.00[AMR][1000 genomes]
rs73487041	1.00[AMR][1000 genomes]
rs73487213	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73487217	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73487362	1.00[AMR][1000 genomes]
rs73487364	1.00[AMR][1000 genomes]
rs73487366	1.00[AMR][1000 genomes]
rs73487369	1.00[AMR][1000 genomes]
rs73487370	1.00[AMR][1000 genomes]
rs73487375	1.00[AMR][1000 genomes]
rs73487382	1.00[AMR][1000 genomes]
rs73487384	1.00[AMR][1000 genomes]
rs73487388	1.00[AMR][1000 genomes]
rs73487396	1.00[AMR][1000 genomes]
rs73487397	1.00[AMR][1000 genomes]
rs73487401	1.00[AMR][1000 genomes]
rs73488956	1.00[AMR][1000 genomes]
rs73489261	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73489274	1.00[AMR][1000 genomes]
rs73489283	1.00[AMR][1000 genomes]
rs73489288	1.00[AMR][1000 genomes]
rs73489300	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73489406	1.00[AMR][1000 genomes]
rs73489411	1.00[AMR][1000 genomes]
rs73489412	1.00[AMR][1000 genomes]
rs73489413	1.00[AMR][1000 genomes]
rs73489414	1.00[AMR][1000 genomes]
rs73489416	1.00[AMR][1000 genomes]
rs73489425	1.00[AMR][1000 genomes]
rs73489426	1.00[AMR][1000 genomes]
rs73489436	1.00[AMR][1000 genomes]
rs73489437	1.00[AMR][1000 genomes]
rs73489443	1.00[AMR][1000 genomes]
rs73489445	1.00[AMR][1000 genomes]
rs73491114	1.00[AMR][1000 genomes]
rs73491129	1.00[AMR][1000 genomes]
rs73491151	1.00[AMR][1000 genomes]
rs73491159	1.00[AMR][1000 genomes]
rs7747749	1.00[AMR][1000 genomes]
rs7776225	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:23 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033794	chr6:61886428-62877254	Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv1027650	chr6:61886428-62877393	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv462963	chr6:61963172-62899514	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
4	nsv603266	chr6:61963172-62899514	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
5	nsv603268	chr6:61963173-62899514	Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Weak transcription Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
6	nsv932029	chr6:61967253-62900503	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
7	nsv916376	chr6:61967253-62927185	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
8	nsv529782	chr6:61971892-62877253	ZNF genes & repeats Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
9	nsv1022364	chr6:62019939-62877193	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
10	nsv538261	chr6:62019939-62877193	Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
11	esv17049	chr6:62178788-62919415	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
12	nsv603277	chr6:62183901-62899514	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
13	nsv1032202	chr6:62236498-62907004	Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
14	nsv538262	chr6:62236498-62907004	ZNF genes & repeats Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
15	nsv1025290	chr6:62236498-62913561	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
16	nsv538263	chr6:62236498-62913561	Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
17	nsv948986	chr6:62504369-62899427	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
18	nsv1029562	chr6:62515908-62854722	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
19	nsv533083	chr6:62531786-62877253	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
20	nsv603316	chr6:62600980-62927514	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
21	nsv1034161	chr6:62682632-62809871	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
22	esv2763556	chr6:62682644-62809883	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
23	nsv1030694	chr6:62692221-62800863	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:62724400-62749400	Weak transcription	Primary B cells from cord blood	blood
2	chr6:62746400-62748600	Enhancers	iPS-20b Cell Line	embryonic stem cell
3	chr6:62746400-62749000	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr6:62746600-62748600	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr6:62748000-62748600	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr6:62748200-62749000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
7	chr6:62748200-62749200	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr6:62748200-62754800	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr6:62748400-62748600	Enhancers	Brain Anterior Caudate	brain
10	chr6:62748400-62749800	Enhancers	iPS-15b Cell Line	embryonic stem cell

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