Variant report

Variant	rs73489436
Chromosome Location	chr6:62643959-62643960
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 105 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:80)

rs_ID	r²[population]
rs16868143	1.00[AMR][1000 genomes]
rs16868380	1.00[AMR][1000 genomes]
rs16868439	1.00[AMR][1000 genomes]
rs16869262	1.00[AMR][1000 genomes]
rs16869656	1.00[AMR][1000 genomes]
rs16899878	1.00[AMR][1000 genomes]
rs16899888	1.00[AMR][1000 genomes]
rs16900008	1.00[AMR][1000 genomes]
rs1931810	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2065064	1.00[AMR][1000 genomes]
rs35081977	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4538689	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57817009	1.00[AMR][1000 genomes]
rs59328200	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59498632	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60760931	1.00[AMR][1000 genomes]
rs60880752	1.00[AMR][1000 genomes]
rs61337484	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6912048	1.00[AMR][1000 genomes]
rs6915522	1.00[AMR][1000 genomes]
rs6919877	1.00[AMR][1000 genomes]
rs6925699	1.00[AMR][1000 genomes]
rs6927065	1.00[AMR][1000 genomes]
rs6929673	1.00[AMR][1000 genomes]
rs73476655	1.00[AMR][1000 genomes]
rs73476673	1.00[AMR][1000 genomes]
rs73476678	1.00[AMR][1000 genomes]
rs73476687	1.00[AMR][1000 genomes]
rs73476688	1.00[AMR][1000 genomes]
rs73476690	1.00[AMR][1000 genomes]
rs73476693	1.00[AMR][1000 genomes]
rs73476698	1.00[AMR][1000 genomes]
rs73478915	1.00[AMR][1000 genomes]
rs73478925	1.00[AMR][1000 genomes]
rs73478943	1.00[AMR][1000 genomes]
rs73478965	1.00[AMR][1000 genomes]
rs73481173	1.00[AMR][1000 genomes]
rs73482836	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73483208	1.00[AMR][1000 genomes]
rs73485387	1.00[AMR][1000 genomes]
rs73485395	1.00[AMR][1000 genomes]
rs73487213	1.00[AMR][1000 genomes]
rs73487217	1.00[AMR][1000 genomes]
rs73487362	1.00[AMR][1000 genomes]
rs73487364	1.00[AMR][1000 genomes]
rs73487366	1.00[AMR][1000 genomes]
rs73487369	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73487370	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73487375	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73487382	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73487384	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73487388	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73487396	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73487397	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73487401	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73489261	1.00[AMR][1000 genomes]
rs73489274	1.00[AMR][1000 genomes]
rs73489283	1.00[AMR][1000 genomes]
rs73489288	1.00[AMR][1000 genomes]
rs73489300	1.00[AMR][1000 genomes]
rs73489406	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73489411	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73489412	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73489413	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73489414	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73489416	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73489425	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73489426	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73489431	0.83[AFR][1000 genomes]
rs73489437	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73489443	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73489445	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73491114	1.00[AMR][1000 genomes]
rs7747749	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7759566	1.00[AMR][1000 genomes]
rs7771938	1.00[AMR][1000 genomes]
rs7776225	1.00[AMR][1000 genomes]
rs9451443	1.00[AMR][1000 genomes]
rs9451718	1.00[AMR][1000 genomes]
rs9968831	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:25 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033794	chr6:61886428-62877254	Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv1027650	chr6:61886428-62877393	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv603255	chr6:61896616-62651063	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
4	nsv462961	chr6:61963172-62682069	Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
5	nsv462963	chr6:61963172-62899514	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
6	nsv603266	chr6:61963172-62899514	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
7	nsv603267	chr6:61963173-62682069	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
8	nsv603268	chr6:61963173-62899514	Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Weak transcription Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
9	nsv932029	chr6:61967253-62900503	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
10	nsv916376	chr6:61967253-62927185	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
11	nsv529782	chr6:61971892-62877253	ZNF genes & repeats Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
12	nsv948423	chr6:61972225-62725552	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
13	nsv1022364	chr6:62019939-62877193	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
14	nsv538261	chr6:62019939-62877193	Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
15	esv17049	chr6:62178788-62919415	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
16	nsv603277	chr6:62183901-62899514	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
17	nsv1032202	chr6:62236498-62907004	Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
18	nsv538262	chr6:62236498-62907004	ZNF genes & repeats Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
19	nsv1025290	chr6:62236498-62913561	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
20	nsv538263	chr6:62236498-62913561	Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
21	nsv603315	chr6:62454353-62651063	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
22	nsv948986	chr6:62504369-62899427	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
23	nsv1029562	chr6:62515908-62854722	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
24	nsv533083	chr6:62531786-62877253	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
25	nsv603316	chr6:62600980-62927514	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:62575400-62667600	Weak transcription	Primary B cells from cord blood	blood
2	chr6:62636400-62644600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links