Variant report

Variant	rs6919877
Chromosome Location	chr6:62432700-62432701
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 121 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:96)

rs_ID	r²[population]
rs1336355	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16897351	1.00[AMR][1000 genomes]
rs16897578	1.00[AMR][1000 genomes]
rs16897591	1.00[AMR][1000 genomes]
rs16898278	1.00[AMR][1000 genomes]
rs16898587	1.00[AMR][1000 genomes]
rs16898634	1.00[AMR][1000 genomes]
rs16898645	1.00[AMR][1000 genomes]
rs16899878	1.00[AMR][1000 genomes]
rs16899888	1.00[AMR][1000 genomes]
rs16900008	1.00[AMR][1000 genomes]
rs1931810	1.00[AMR][1000 genomes]
rs2065064	1.00[AMR][1000 genomes]
rs35081977	1.00[AMR][1000 genomes]
rs4538689	1.00[AMR][1000 genomes]
rs56224835	1.00[AMR][1000 genomes]
rs56719256	1.00[AMR][1000 genomes]
rs57817009	1.00[AMR][1000 genomes]
rs58238918	1.00[AMR][1000 genomes]
rs58850307	1.00[AMR][1000 genomes]
rs59328200	1.00[AMR][1000 genomes]
rs59498632	1.00[AMR][1000 genomes]
rs60760931	1.00[AMR][1000 genomes]
rs60880752	1.00[AMR][1000 genomes]
rs61337484	1.00[AMR][1000 genomes]
rs6903385	0.89[AFR][1000 genomes]
rs6903830	1.00[AMR][1000 genomes]
rs6912048	1.00[AMR][1000 genomes]
rs6915000	1.00[AMR][1000 genomes]
rs6919889	0.89[AFR][1000 genomes]
rs6927065	1.00[AMR][1000 genomes]
rs6929673	1.00[AMR][1000 genomes]
rs6930594	1.00[AMR][1000 genomes]
rs73472100	1.00[AMR][1000 genomes]
rs73473806	1.00[AMR][1000 genomes]
rs73473821	1.00[AMR][1000 genomes]
rs73473828	1.00[AMR][1000 genomes]
rs73476655	1.00[AMR][1000 genomes]
rs73476673	1.00[AMR][1000 genomes]
rs73476678	1.00[AMR][1000 genomes]
rs73476687	1.00[AMR][1000 genomes]
rs73476688	1.00[AMR][1000 genomes]
rs73476690	1.00[AMR][1000 genomes]
rs73476693	1.00[AMR][1000 genomes]
rs73476698	1.00[AMR][1000 genomes]
rs73476810	1.00[AMR][1000 genomes]
rs73476849	1.00[AMR][1000 genomes]
rs73476858	1.00[AMR][1000 genomes]
rs73476862	1.00[AMR][1000 genomes]
rs73478822	1.00[AMR][1000 genomes]
rs73478857	1.00[AMR][1000 genomes]
rs73478915	1.00[AMR][1000 genomes]
rs73478925	1.00[AMR][1000 genomes]
rs73478943	1.00[AMR][1000 genomes]
rs73478965	1.00[AMR][1000 genomes]
rs73484514	1.00[AMR][1000 genomes]
rs73484528	1.00[AMR][1000 genomes]
rs73484536	1.00[AMR][1000 genomes]
rs73487362	1.00[AMR][1000 genomes]
rs73487364	1.00[AMR][1000 genomes]
rs73487366	1.00[AMR][1000 genomes]
rs73487369	1.00[AMR][1000 genomes]
rs73487370	1.00[AMR][1000 genomes]
rs73487375	1.00[AMR][1000 genomes]
rs73487382	1.00[AMR][1000 genomes]
rs73487384	1.00[AMR][1000 genomes]
rs73487388	1.00[AMR][1000 genomes]
rs73487396	1.00[AMR][1000 genomes]
rs73487397	1.00[AMR][1000 genomes]
rs73487401	1.00[AMR][1000 genomes]
rs73489406	1.00[AMR][1000 genomes]
rs73489411	1.00[AMR][1000 genomes]
rs73489412	1.00[AMR][1000 genomes]
rs73489413	1.00[AMR][1000 genomes]
rs73489414	1.00[AMR][1000 genomes]
rs73489416	1.00[AMR][1000 genomes]
rs73489425	1.00[AMR][1000 genomes]
rs73489426	1.00[AMR][1000 genomes]
rs73489436	1.00[AMR][1000 genomes]
rs73489437	1.00[AMR][1000 genomes]
rs73489443	1.00[AMR][1000 genomes]
rs73489445	1.00[AMR][1000 genomes]
rs73759706	1.00[AMR][1000 genomes]
rs73759715	1.00[AMR][1000 genomes]
rs73759732	1.00[AMR][1000 genomes]
rs73759751	1.00[AMR][1000 genomes]
rs7747749	1.00[AMR][1000 genomes]
rs7750051	1.00[AMR][1000 genomes]
rs7759566	1.00[AMR][1000 genomes]
rs7762335	1.00[AMR][1000 genomes]
rs7771938	1.00[AMR][1000 genomes]
rs7776225	1.00[AMR][1000 genomes]
rs9444708	0.89[AFR][1000 genomes]
rs9451443	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9451718	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9968831	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:25 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017185	chr6:61886428-62472581	ZNF genes & repeats Weak transcription Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	nsv1018659	chr6:61886428-62620085	Weak transcription ZNF genes & repeats Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv1033794	chr6:61886428-62877254	Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
4	nsv1027650	chr6:61886428-62877393	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
5	nsv603255	chr6:61896616-62651063	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
6	esv2830165	chr6:61963172-62461924	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
7	nsv462960	chr6:61963172-62472129	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
8	nsv603265	chr6:61963172-62472129	Bivalent Enhancer Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
9	nsv462961	chr6:61963172-62682069	Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
10	nsv462963	chr6:61963172-62899514	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
11	nsv603266	chr6:61963172-62899514	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
12	nsv603267	chr6:61963173-62682069	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
13	nsv603268	chr6:61963173-62899514	Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Weak transcription Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
14	nsv932029	chr6:61967253-62900503	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
15	nsv916376	chr6:61967253-62927185	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
16	nsv529782	chr6:61971892-62877253	ZNF genes & repeats Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
17	nsv948423	chr6:61972225-62725552	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
18	nsv1022364	chr6:62019939-62877193	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
19	nsv538261	chr6:62019939-62877193	Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
20	esv17049	chr6:62178788-62919415	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
21	nsv603277	chr6:62183901-62899514	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
22	nsv1032202	chr6:62236498-62907004	Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
23	nsv538262	chr6:62236498-62907004	ZNF genes & repeats Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
24	nsv1025290	chr6:62236498-62913561	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
25	nsv538263	chr6:62236498-62913561	Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:62432600-62433000	ZNF genes & repeats	Fetal Intestine Small	intestine

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