Variant report

Variant	rs7776225
Chromosome Location	chr6:62574979-62574980
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 107 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:82)

rs_ID	r²[population]
rs1336355	1.00[AMR][1000 genomes]
rs16868143	1.00[AMR][1000 genomes]
rs16868380	1.00[AMR][1000 genomes]
rs16868439	1.00[AMR][1000 genomes]
rs16869262	1.00[AMR][1000 genomes]
rs16898587	1.00[AMR][1000 genomes]
rs16898634	1.00[AMR][1000 genomes]
rs16898645	1.00[AMR][1000 genomes]
rs16899878	1.00[AMR][1000 genomes]
rs16899888	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16900008	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1931810	1.00[AMR][1000 genomes]
rs2065064	1.00[AMR][1000 genomes]
rs35081977	1.00[AMR][1000 genomes]
rs4538689	1.00[AMR][1000 genomes]
rs56224835	1.00[AMR][1000 genomes]
rs56719256	1.00[AMR][1000 genomes]
rs57817009	1.00[AMR][1000 genomes]
rs59328200	1.00[AMR][1000 genomes]
rs59498632	1.00[AMR][1000 genomes]
rs60760931	1.00[AMR][1000 genomes]
rs60880752	1.00[AMR][1000 genomes]
rs61337484	1.00[AMR][1000 genomes]
rs6912048	1.00[AMR][1000 genomes]
rs6915522	1.00[AMR][1000 genomes]
rs6919877	1.00[AMR][1000 genomes]
rs6925699	1.00[AMR][1000 genomes]
rs6927065	1.00[AMR][1000 genomes]
rs6929673	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6930594	1.00[AMR][1000 genomes]
rs73473821	1.00[AMR][1000 genomes]
rs73473828	1.00[AMR][1000 genomes]
rs73476655	1.00[AMR][1000 genomes]
rs73476673	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73476678	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73476687	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73476688	1.00[AMR][1000 genomes]
rs73476690	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73476693	1.00[AMR][1000 genomes]
rs73476698	1.00[AMR][1000 genomes]
rs73478915	1.00[AMR][1000 genomes]
rs73478925	1.00[AMR][1000 genomes]
rs73478943	1.00[AMR][1000 genomes]
rs73478965	1.00[AMR][1000 genomes]
rs73481173	1.00[AMR][1000 genomes]
rs73482836	1.00[AMR][1000 genomes]
rs73483208	1.00[AMR][1000 genomes]
rs73485387	1.00[AMR][1000 genomes]
rs73485395	1.00[AMR][1000 genomes]
rs73487213	1.00[AMR][1000 genomes]
rs73487217	1.00[AMR][1000 genomes]
rs73487362	1.00[AMR][1000 genomes]
rs73487364	1.00[AMR][1000 genomes]
rs73487366	1.00[AMR][1000 genomes]
rs73487369	1.00[AMR][1000 genomes]
rs73487370	1.00[AMR][1000 genomes]
rs73487375	1.00[AMR][1000 genomes]
rs73487382	1.00[AMR][1000 genomes]
rs73487384	1.00[AMR][1000 genomes]
rs73487388	1.00[AMR][1000 genomes]
rs73487396	1.00[AMR][1000 genomes]
rs73487397	1.00[AMR][1000 genomes]
rs73487401	1.00[AMR][1000 genomes]
rs73489406	1.00[AMR][1000 genomes]
rs73489411	1.00[AMR][1000 genomes]
rs73489412	1.00[AMR][1000 genomes]
rs73489413	1.00[AMR][1000 genomes]
rs73489414	1.00[AMR][1000 genomes]
rs73489416	1.00[AMR][1000 genomes]
rs73489425	1.00[AMR][1000 genomes]
rs73489426	1.00[AMR][1000 genomes]
rs73489436	1.00[AMR][1000 genomes]
rs73489437	1.00[AMR][1000 genomes]
rs73489443	1.00[AMR][1000 genomes]
rs73489445	1.00[AMR][1000 genomes]
rs73759751	1.00[AMR][1000 genomes]
rs7747749	1.00[AMR][1000 genomes]
rs7759566	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7771938	1.00[AMR][1000 genomes]
rs9451443	1.00[AMR][1000 genomes]
rs9451718	1.00[AMR][1000 genomes]
rs9968831	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:25 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018659	chr6:61886428-62620085	Weak transcription ZNF genes & repeats Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv1033794	chr6:61886428-62877254	Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv1027650	chr6:61886428-62877393	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
4	nsv603255	chr6:61896616-62651063	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
5	nsv462961	chr6:61963172-62682069	Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
6	nsv462963	chr6:61963172-62899514	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
7	nsv603266	chr6:61963172-62899514	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
8	nsv603267	chr6:61963173-62682069	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
9	nsv603268	chr6:61963173-62899514	Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Weak transcription Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
10	nsv932029	chr6:61967253-62900503	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
11	nsv916376	chr6:61967253-62927185	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
12	nsv529782	chr6:61971892-62877253	ZNF genes & repeats Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
13	nsv948423	chr6:61972225-62725552	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
14	nsv1022364	chr6:62019939-62877193	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
15	nsv538261	chr6:62019939-62877193	Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
16	esv17049	chr6:62178788-62919415	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
17	nsv603277	chr6:62183901-62899514	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
18	nsv1032202	chr6:62236498-62907004	Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
19	nsv538262	chr6:62236498-62907004	ZNF genes & repeats Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
20	nsv1025290	chr6:62236498-62913561	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
21	nsv538263	chr6:62236498-62913561	Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
22	nsv603315	chr6:62454353-62651063	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
23	nsv948986	chr6:62504369-62899427	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
24	nsv1029562	chr6:62515908-62854722	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
25	nsv533083	chr6:62531786-62877253	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:62564400-62585000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr6:62574000-62575400	ZNF genes & repeats	Primary B cells from cord blood	blood
3	chr6:62574400-62576200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr6:62574800-62575200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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