Variant report

Variant	rs6933639
Chromosome Location	chr6:150215295-150215296
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:150185187..150186828-chr6:150215109..150217579,2	MCF-7	breast:
2	chr6:150183832..150186232-chr6:150215270..150224001,9	MCF-7	breast:
3	chr6:150212160..150213980-chr6:150214968..150218117,3	K562	blood:

Variant related genes	Relation type
ENSG00000268592	Chromatin interaction
ENSG00000120256	Chromatin interaction
ENSG00000164520	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs2342772	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56128014	1.00[AMR][1000 genomes]
rs58372149	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6899726	1.00[EUR][1000 genomes]
rs73782115	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73782119	1.00[AMR][1000 genomes]
rs73782126	1.00[AMR][1000 genomes]
rs73782130	1.00[AMR][1000 genomes]
rs73782134	1.00[AMR][1000 genomes]
rs7766987	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886764	chr6:150114745-150393683	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv517022	chr6:150145001-150426272	Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Strong transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv886765	chr6:150198491-150288722	Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	esv1817805	chr6:150209592-150268708	Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150205600-150216000	Weak transcription	Right Atrium	heart
2	chr6:150205800-150216000	Weak transcription	Stomach Smooth Muscle	stomach
3	chr6:150206000-150216000	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr6:150209600-150215800	Weak transcription	Adipose Nuclei	Adipose
5	chr6:150209600-150216000	Weak transcription	Duodenum Mucosa	Duodenum
6	chr6:150209600-150222200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr6:150212000-150216000	Weak transcription	Placenta	Placenta
8	chr6:150212000-150216000	Weak transcription	Lung	lung
9	chr6:150212000-150216000	Weak transcription	Ovary	ovary
10	chr6:150212000-150216000	Weak transcription	Psoas Muscle	Psoas
11	chr6:150212000-150216200	Weak transcription	Fetal Muscle Trunk	muscle
12	chr6:150212200-150215800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr6:150212200-150215800	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr6:150212400-150216200	Weak transcription	Fetal Muscle Leg	muscle
15	chr6:150212600-150215800	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr6:150212600-150216000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr6:150212600-150216000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr6:150212600-150216000	Weak transcription	Esophagus	oesophagus
19	chr6:150212600-150216200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr6:150212600-150216200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr6:150212600-150216200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr6:150212600-150216200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr6:150212600-150216400	Weak transcription	HSMMtube	muscle
24	chr6:150212800-150215800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr6:150212800-150215800	Weak transcription	A549	lung
26	chr6:150212800-150215800	Weak transcription	Hela-S3	cervix
27	chr6:150212800-150215800	Weak transcription	NHDF-Ad	bronchial
28	chr6:150212800-150215800	Weak transcription	NHEK	skin
29	chr6:150212800-150216000	Weak transcription	Muscle Satellite Cultured Cells	--
30	chr6:150212800-150216200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr6:150212800-150216200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr6:150212800-150216400	Weak transcription	Osteobl	bone
33	chr6:150212800-150216600	Weak transcription	HSMM	muscle
34	chr6:150213200-150216000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr6:150213200-150216000	Weak transcription	HMEC	breast
36	chr6:150213600-150216000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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