Variant report

Variant	rs6933912
Chromosome Location	chr6:11474840-11474841
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1522446	1.00[JPT][hapmap];0.95[YRI][hapmap]
rs16871376	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16871392	1.00[JPT][hapmap];0.91[EUR][1000 genomes]
rs513870	0.89[YRI][hapmap]
rs594164	1.00[YRI][hapmap]
rs620729	0.89[YRI][hapmap]
rs6900342	1.00[JPT][hapmap]
rs6900564	1.00[JPT][hapmap]
rs6900578	1.00[JPT][hapmap]
rs6900740	1.00[JPT][hapmap]
rs6901743	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6903478	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6904754	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6915795	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6936794	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7756513	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021078	chr6:10819083-11558560	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv538135	chr6:10819083-11558560	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
3	nsv432848	chr6:11371614-11560114	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11470200-11479200	Weak transcription	Fetal Kidney	kidney
2	chr6:11471800-11475200	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr6:11473200-11475000	Enhancers	Left Ventricle	heart
4	chr6:11473200-11475000	Enhancers	GM12878-XiMat	blood
5	chr6:11473200-11475000	Bivalent Enhancer	HSMMtube	muscle
6	chr6:11473800-11475200	Weak transcription	Fetal Lung	lung
7	chr6:11474000-11475000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr6:11474000-11475000	Enhancers	Ovary	ovary
9	chr6:11474000-11475000	Enhancers	Psoas Muscle	Psoas
10	chr6:11474000-11477200	Weak transcription	Aorta	Aorta
11	chr6:11474400-11475000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr6:11474400-11475000	Enhancers	Lung	lung
13	chr6:11474600-11475800	Enhancers	Skeletal Muscle Male	skeletal muscle
14	chr6:11474800-11475000	Enhancers	Placenta	Placenta
15	chr6:11474800-11475000	Enhancers	Right Atrium	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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