Variant report

Variant	rs6900578
Chromosome Location	chr6:11589656-11589657
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:11585369..11588205-chr6:11589273..11592735,3	MCF-7	breast:
2	chr6:11589569..11591448-chr6:12289511..12291212,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000078401	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10947438	0.82[EUR][1000 genomes]
rs11752274	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1522446	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16871392	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs16871480	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs58875134	0.87[ASN][1000 genomes]
rs59036599	0.87[ASN][1000 genomes]
rs59218333	0.87[ASN][1000 genomes]
rs594164	1.00[CHB][hapmap]
rs59537407	0.87[ASN][1000 genomes]
rs6900342	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs6900564	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs6900740	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs6922363	0.87[ASN][1000 genomes]
rs72836611	0.94[ASN][1000 genomes]
rs7756513	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11586200-11591200	Enhancers	NHLF	lung
2	chr6:11587000-11589800	Weak transcription	Fetal Lung	lung
3	chr6:11587000-11592400	Weak transcription	Liver	Liver
4	chr6:11587200-11590400	Enhancers	Muscle Satellite Cultured Cells	--
5	chr6:11587200-11590400	Weak transcription	Rectal Smooth Muscle	rectum
6	chr6:11587200-11592600	Weak transcription	Ovary	ovary
7	chr6:11587200-11593000	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr6:11587400-11589800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr6:11587400-11590000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr6:11587400-11591000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr6:11587400-11592200	Weak transcription	Fetal Muscle Leg	muscle
12	chr6:11587400-11592400	Weak transcription	Stomach Smooth Muscle	stomach
13	chr6:11587400-11592600	Weak transcription	Fetal Muscle Trunk	muscle
14	chr6:11587400-11592800	Weak transcription	Placenta	Placenta
15	chr6:11587400-11593600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr6:11587600-11589800	Weak transcription	Fetal Stomach	stomach
17	chr6:11587600-11592800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr6:11588600-11590000	Genic enhancers	HSMM	muscle
19	chr6:11588600-11591000	Weak transcription	Aorta	Aorta
20	chr6:11589200-11589800	Transcr. at gene 5' and 3'	HSMMtube	muscle
21	chr6:11589400-11590000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr6:11589400-11590400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr6:11589400-11590600	Enhancers	Placenta Amnion	Placenta Amnion
24	chr6:11589400-11590800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr6:11589400-11591200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr6:11589400-11591200	Enhancers	HUVEC	blood vessel
27	chr6:11589400-11591200	Enhancers	NH-A	brain
28	chr6:11589400-11591200	Enhancers	NHDF-Ad	bronchial
29	chr6:11589400-11591200	Enhancers	Osteobl	bone
30	chr6:11589400-11591400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr6:11589600-11589800	Enhancers	Pancreatic Islets	Pancreatic Islet
32	chr6:11589600-11590200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr6:11589600-11590800	Enhancers	A549	lung

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