Variant report

Variant	rs16871480
Chromosome Location	chr6:11579411-11579412
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11752274	1.00[ASN][1000 genomes]
rs16871392	0.81[ASN][1000 genomes]
rs58875134	0.87[ASN][1000 genomes]
rs59036599	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs59218333	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs59537407	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6900342	0.87[ASN][1000 genomes]
rs6900564	0.87[ASN][1000 genomes]
rs6900578	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6900740	0.87[ASN][1000 genomes]
rs6922363	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72836611	0.94[ASN][1000 genomes]
rs7756513	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv600989	chr6:11509323-11581990	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv1015234	chr6:11545582-11583516	Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11567000-11579800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
2	chr6:11567600-11581400	Weak transcription	Fetal Brain Female	brain
3	chr6:11567600-11582600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr6:11567600-11586200	Weak transcription	Fetal Intestine Small	intestine
5	chr6:11567600-11586400	Weak transcription	Fetal Stomach	stomach
6	chr6:11567600-11586600	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr6:11567800-11580000	Weak transcription	Primary B cells from cord blood	blood
8	chr6:11567800-11584200	Weak transcription	HSMMtube	muscle
9	chr6:11567800-11586400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr6:11568000-11586200	Weak transcription	Liver	Liver
11	chr6:11568000-11586600	Weak transcription	Brain Angular Gyrus	brain
12	chr6:11568600-11586800	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr6:11571800-11586600	Weak transcription	Ovary	ovary
14	chr6:11575800-11581000	Weak transcription	Primary hematopoietic stem cells	blood
15	chr6:11575800-11584400	Weak transcription	HSMM	muscle
16	chr6:11575800-11586200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr6:11576000-11580200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr6:11576000-11582600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
19	chr6:11576000-11584600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr6:11576000-11586200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr6:11576000-11586400	Weak transcription	HepG2	liver
22	chr6:11576400-11580000	Weak transcription	GM12878-XiMat	blood
23	chr6:11576400-11581600	Weak transcription	Dnd41	blood
24	chr6:11578600-11583200	Enhancers	Primary neutrophils fromperipheralblood	blood
25	chr6:11578800-11580200	Genic enhancers	Primary monocytes fromperipheralblood	blood
26	chr6:11578800-11580200	Genic enhancers	Monocytes-CD14+_RO01746	blood
27	chr6:11579200-11586400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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