Variant report

Variant	rs6933914
Chromosome Location	chr6:119536200-119536201
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:119526535..119530412-chr6:119531327..119536580,5	K562	blood:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs1104741	0.87[EUR][1000 genomes]
rs11153798	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11153801	0.81[ASN][1000 genomes]
rs11153802	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11755686	0.81[ASN][1000 genomes]
rs11962211	0.87[EUR][1000 genomes]
rs12207164	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12211868	0.87[EUR][1000 genomes]
rs1408491	0.86[ASN][1000 genomes]
rs1408492	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1408493	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1555683	0.81[ASN][1000 genomes]
rs195046	0.81[EUR][1000 genomes]
rs195051	0.81[EUR][1000 genomes]
rs195091	0.81[EUR][1000 genomes]
rs2064160	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2142890	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2267672	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2267673	0.82[AFR][1000 genomes]
rs2267674	0.82[AFR][1000 genomes]
rs2267675	0.82[AFR][1000 genomes]
rs2299879	0.81[ASN][1000 genomes]
rs2357162	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2357163	0.83[ASN][1000 genomes]
rs3798609	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3798616	0.83[ASN][1000 genomes]
rs3822997	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4945633	0.86[EUR][1000 genomes]
rs7357047	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7357048	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs763293	0.83[ASN][1000 genomes]
rs9320684	0.82[EUR][1000 genomes]
rs9385068	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9489625	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9489627	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9489628	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9489633	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025995	chr6:119407742-119709548	Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv886570	chr6:119450888-119600556	Strong transcription Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv1017507	chr6:119465981-119664949	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv1034992	chr6:119512657-119540895	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:119494600-119547400	Weak transcription	Esophagus	oesophagus
2	chr6:119498000-119536600	Weak transcription	Fetal Heart	heart
3	chr6:119503400-119539800	Weak transcription	Gastric	stomach
4	chr6:119519200-119558400	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr6:119524800-119537000	Weak transcription	Pancreas	Pancrea
6	chr6:119524800-119539000	Weak transcription	Primary T helper cells PMA-I stimulated	--
7	chr6:119524800-119558400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr6:119525400-119537000	Weak transcription	Right Ventricle	heart
9	chr6:119525400-119537400	Weak transcription	Brain Anterior Caudate	brain
10	chr6:119525400-119548600	Weak transcription	Aorta	Aorta
11	chr6:119525400-119556000	Weak transcription	Rectal Mucosa Donor 29	rectum
12	chr6:119525400-119558400	Weak transcription	Small Intestine	intestine
13	chr6:119525800-119537000	Weak transcription	Left Ventricle	heart
14	chr6:119525800-119554200	Weak transcription	Duodenum Mucosa	Duodenum
15	chr6:119525800-119555800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr6:119526000-119538800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
17	chr6:119526000-119555200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr6:119526000-119558400	Weak transcription	Placenta	Placenta
19	chr6:119526200-119558400	Weak transcription	Sigmoid Colon	Sigmoid Colon
20	chr6:119526600-119536400	Weak transcription	Fetal Intestine Large	intestine
21	chr6:119527800-119536400	Weak transcription	Fetal Intestine Small	intestine
22	chr6:119528600-119551200	Weak transcription	Primary B cells from cord blood	blood
23	chr6:119530000-119537000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
24	chr6:119530000-119537200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr6:119530200-119536400	Weak transcription	Fetal Stomach	stomach
26	chr6:119531000-119536400	Weak transcription	Fetal Kidney	kidney
27	chr6:119531200-119552000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
28	chr6:119531400-119537200	Weak transcription	Right Atrium	heart
29	chr6:119531600-119558400	Weak transcription	NHLF	lung
30	chr6:119532200-119536400	Weak transcription	Duodenum Smooth Muscle	Duodenum
31	chr6:119532200-119537200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr6:119532800-119536600	Weak transcription	K562	blood
33	chr6:119534400-119536400	Weak transcription	Colon Smooth Muscle	Colon
34	chr6:119534600-119536400	Weak transcription	HepG2	liver
35	chr6:119534600-119536600	Weak transcription	Primary hematopoietic stem cells	blood
36	chr6:119534800-119536400	Weak transcription	Pancreatic Islets	Pancreatic Islet
37	chr6:119535400-119538400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr6:119535600-119538200	Enhancers	Fetal Lung	lung
39	chr6:119535800-119536200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr6:119535800-119536200	Weak transcription	Liver	Liver
41	chr6:119535800-119537600	Enhancers	Adipose Nuclei	Adipose
42	chr6:119536000-119537000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr6:119536000-119537000	Weak transcription	Ovary	ovary
44	chr6:119536200-119537000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr6:119536200-119538400	Enhancers	Liver	Liver

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