Variant report

Variant	rs9489633
Chromosome Location	chr6:119568651-119568652
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:119493505..119495006-chr6:119566194..119568932,2	K562	blood:

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs1076656	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1104741	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11153798	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11153801	0.86[ASN][1000 genomes]
rs11153802	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11755686	0.86[ASN][1000 genomes]
rs11962211	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12207164	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12211868	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1408491	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1408492	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1408493	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1555683	0.87[ASN][1000 genomes]
rs195046	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs195051	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs195062	0.91[EUR][1000 genomes]
rs195079	0.87[EUR][1000 genomes]
rs195083	0.86[EUR][1000 genomes]
rs195088	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs195091	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2064160	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2093906	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs2142890	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2267672	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2299878	0.83[AFR][1000 genomes]
rs2299879	0.87[ASN][1000 genomes]
rs2299881	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2357162	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2357163	0.88[ASN][1000 genomes]
rs3798609	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3798616	0.88[ASN][1000 genomes]
rs3822997	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4945633	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6569063	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6569074	0.81[EUR][1000 genomes]
rs6933914	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7357047	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7357048	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs763293	0.88[ASN][1000 genomes]
rs9320684	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9385068	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9489625	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9489627	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9489628	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9489637	0.80[EUR][1000 genomes]
rs9489654	0.87[ASN][1000 genomes]
rs975578	0.85[AFR][1000 genomes]
rs980818	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025995	chr6:119407742-119709548	Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv886570	chr6:119450888-119600556	Strong transcription Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv1017507	chr6:119465981-119664949	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	esv3447598	chr6:119558591-120119384	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
5	esv3389526	chr6:119558598-120190087	ZNF genes & repeats Enhancers Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:69 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:119547400-119583000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr6:119558800-119569200	Weak transcription	Primary T cells fromperipheralblood	blood
3	chr6:119558800-119569600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr6:119558800-119571800	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr6:119558800-119572000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr6:119558800-119572200	Weak transcription	Right Ventricle	heart
7	chr6:119558800-119572800	Weak transcription	Primary neutrophils fromperipheralblood	blood
8	chr6:119558800-119573600	Weak transcription	Lung	lung
9	chr6:119558800-119575200	Weak transcription	Esophagus	oesophagus
10	chr6:119558800-119576400	Weak transcription	Primary T helper cells PMA-I stimulated	--
11	chr6:119558800-119576400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
12	chr6:119558800-119576400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
13	chr6:119558800-119576400	Weak transcription	Dnd41	blood
14	chr6:119558800-119576600	Weak transcription	Spleen	Spleen
15	chr6:119558800-119576800	Weak transcription	Primary T helper cells fromperipheralblood	blood
16	chr6:119558800-119577600	Weak transcription	Aorta	Aorta
17	chr6:119558800-119578200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
18	chr6:119558800-119578200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
19	chr6:119558800-119578400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
20	chr6:119558800-119578600	Weak transcription	Fetal Thymus	thymus
21	chr6:119558800-119582200	Weak transcription	Colonic Mucosa	Colon
22	chr6:119558800-119589800	Weak transcription	Sigmoid Colon	Sigmoid Colon
23	chr6:119558800-119590200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr6:119558800-119590400	Weak transcription	GM12878-XiMat	blood
25	chr6:119558800-119602000	Weak transcription	Gastric	stomach
26	chr6:119562200-119579400	Weak transcription	NHEK	skin
27	chr6:119562600-119580000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr6:119562600-119580000	Weak transcription	Small Intestine	intestine
29	chr6:119562800-119582200	Weak transcription	Pancreas	Pancrea
30	chr6:119562800-119583000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr6:119562800-119590200	Weak transcription	Fetal Stomach	stomach
32	chr6:119562800-119590800	Weak transcription	Fetal Muscle Leg	muscle
33	chr6:119563400-119570400	Weak transcription	Fetal Intestine Small	intestine
34	chr6:119563400-119571200	Weak transcription	Fetal Heart	heart
35	chr6:119563400-119573800	Weak transcription	Ovary	ovary
36	chr6:119563400-119588000	Weak transcription	Fetal Kidney	kidney
37	chr6:119563400-119590200	Weak transcription	Stomach Smooth Muscle	stomach
38	chr6:119565000-119569000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
39	chr6:119565000-119569200	Strong transcription	Monocytes-CD14+_RO01746	blood
40	chr6:119565000-119572000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr6:119565200-119569800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr6:119565400-119571200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
43	chr6:119565400-119571800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr6:119565600-119572000	Strong transcription	K562	blood
45	chr6:119565600-119572200	Weak transcription	Pancreatic Islets	Pancreatic Islet
46	chr6:119565800-119572200	Strong transcription	Liver	Liver
47	chr6:119566200-119569200	Strong transcription	Rectal Mucosa Donor 29	rectum
48	chr6:119566200-119569400	Strong transcription	Primary B cells from cord blood	blood
49	chr6:119566200-119569400	Strong transcription	Left Ventricle	heart
50	chr6:119566800-119569800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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