Variant report

Variant	rs1076656
Chromosome Location	chr6:119590609-119590610
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-FAM184A-1	chr6:119590298-119590879	NONHSAT114708

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs1104741	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11153801	0.91[ASN][1000 genomes]
rs11153802	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11755686	0.91[ASN][1000 genomes]
rs11962211	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12211868	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1408491	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1408492	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1408493	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1555683	0.90[ASN][1000 genomes]
rs195046	0.87[ASN][1000 genomes]
rs195051	0.87[ASN][1000 genomes]
rs195063	0.86[ASN][1000 genomes]
rs195071	0.92[EUR][1000 genomes]
rs195076	0.86[ASN][1000 genomes]
rs195078	0.88[EUR][1000 genomes]
rs195081	0.86[ASN][1000 genomes]
rs195085	0.80[ASN][1000 genomes]
rs195086	0.81[ASN][1000 genomes]
rs195088	0.87[ASN][1000 genomes]
rs195091	0.87[ASN][1000 genomes]
rs2142885	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2299879	0.90[ASN][1000 genomes]
rs2299881	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2299884	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2357163	0.89[ASN][1000 genomes]
rs2357375	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs3798616	0.89[ASN][1000 genomes]
rs4945633	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4945634	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4946409	0.81[ASN][1000 genomes]
rs6569060	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6569061	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6569063	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6922115	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6922274	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs763293	0.89[ASN][1000 genomes]
rs7775421	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9320684	0.80[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs9401135	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9489624	0.87[EUR][1000 genomes]
rs9489633	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9489637	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9489654	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs980818	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs998194	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025995	chr6:119407742-119709548	Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv886570	chr6:119450888-119600556	Strong transcription Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv1017507	chr6:119465981-119664949	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	esv3447598	chr6:119558591-120119384	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
5	esv3389526	chr6:119558598-120190087	ZNF genes & repeats Enhancers Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:119558800-119602000	Weak transcription	Gastric	stomach
2	chr6:119562800-119590800	Weak transcription	Fetal Muscle Leg	muscle
3	chr6:119568600-119592600	Weak transcription	Primary monocytes fromperipheralblood	blood
4	chr6:119569200-119591600	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr6:119569200-119591600	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr6:119569400-119591600	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr6:119582800-119591600	Weak transcription	Primary neutrophils fromperipheralblood	blood
8	chr6:119583400-119590800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr6:119583400-119591600	Weak transcription	NHDF-Ad	bronchial
10	chr6:119585600-119591000	Genic enhancers	HepG2	liver
11	chr6:119586400-119591200	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr6:119587200-119591800	Weak transcription	Primary B cells from peripheral blood	blood
13	chr6:119588200-119592000	Strong transcription	Liver	Liver
14	chr6:119588800-119590800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
15	chr6:119588800-119591000	Genic enhancers	K562	blood
16	chr6:119589000-119590800	Enhancers	Primary T cells fromperipheralblood	blood
17	chr6:119589000-119591400	Weak transcription	Fetal Brain Female	brain
18	chr6:119589000-119591600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
19	chr6:119589000-119591600	Weak transcription	Fetal Kidney	kidney
20	chr6:119589200-119591600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
21	chr6:119589200-119591600	Weak transcription	Fetal Lung	lung
22	chr6:119589200-119598600	Weak transcription	Colon Smooth Muscle	Colon
23	chr6:119589200-119611000	Weak transcription	Rectal Smooth Muscle	rectum
24	chr6:119589400-119591600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr6:119589600-119591000	Enhancers	Pancreas	Pancrea
26	chr6:119589800-119590800	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr6:119589800-119590800	Strong transcription	Duodenum Mucosa	Duodenum
28	chr6:119589800-119591000	Strong transcription	Fetal Intestine Large	intestine
29	chr6:119589800-119591000	Strong transcription	Fetal Intestine Small	intestine
30	chr6:119589800-119591000	Strong transcription	Thymus	Thymus
31	chr6:119589800-119591200	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr6:119589800-119591600	Weak transcription	Primary T cells from cord blood	blood
33	chr6:119590000-119590800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
34	chr6:119590000-119590800	Strong transcription	Rectal Mucosa Donor 29	rectum
35	chr6:119590000-119590800	Strong transcription	Sigmoid Colon	Sigmoid Colon
36	chr6:119590000-119591000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
37	chr6:119590000-119591200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
38	chr6:119590000-119591200	Strong transcription	Adipose Nuclei	Adipose
39	chr6:119590000-119591400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr6:119590000-119591600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
41	chr6:119590000-119591600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
42	chr6:119590200-119590800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr6:119590200-119590800	ZNF genes & repeats	Fetal Stomach	stomach
44	chr6:119590200-119590800	Genic enhancers	Dnd41	blood
45	chr6:119590200-119591000	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
46	chr6:119590200-119591000	Strong transcription	Left Ventricle	heart
47	chr6:119590200-119591000	Strong transcription	Stomach Smooth Muscle	stomach
48	chr6:119590200-119591200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr6:119590200-119591200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
50	chr6:119590200-119591200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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