Variant report

Variant	rs9489624
Chromosome Location	chr6:119534861-119534862
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:119526535..119530412-chr6:119531327..119536580,5	K562	blood:

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs1076656	0.87[EUR][1000 genomes]
rs10872174	0.85[ASN][1000 genomes]
rs11153798	0.85[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs11962211	0.82[CEU][hapmap]
rs12207164	0.83[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs1408491	0.81[EUR][1000 genomes]
rs1555684	0.93[CHB][hapmap];0.85[ASN][1000 genomes]
rs195071	0.85[CEU][hapmap]
rs195078	0.88[CEU][hapmap]
rs195091	0.81[CEU][hapmap]
rs1980460	0.86[ASN][1000 genomes]
rs2064160	0.83[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs2142885	0.96[CEU][hapmap];0.87[CHB][hapmap];0.81[JPT][hapmap];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2142891	0.85[ASN][1000 genomes]
rs2267672	0.84[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs2267673	0.83[AFR][1000 genomes]
rs2267674	0.83[AFR][1000 genomes]
rs2267675	0.83[AFR][1000 genomes]
rs2299877	0.86[ASN][1000 genomes]
rs2299878	0.88[YRI][hapmap]
rs2299881	0.87[EUR][1000 genomes]
rs2299884	0.96[CEU][hapmap];0.88[CHB][hapmap];0.81[JPT][hapmap];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2357162	0.85[AFR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2357375	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3778110	0.86[CHB][hapmap]
rs3798609	0.86[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs3822997	0.86[AFR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3822998	0.85[ASN][1000 genomes]
rs4945632	0.85[ASN][1000 genomes]
rs4945634	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6569058	0.83[ASN][1000 genomes]
rs6569060	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6569061	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6569062	0.81[CHB][hapmap]
rs6569063	0.87[EUR][1000 genomes]
rs6922115	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6922274	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6933961	0.93[CHB][hapmap];0.85[ASN][1000 genomes]
rs6939774	0.83[ASN][1000 genomes]
rs7357047	0.86[AFR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7357048	0.81[EUR][1000 genomes]
rs7761203	0.85[ASN][1000 genomes]
rs7775421	1.00[CEU][hapmap];0.87[CHB][hapmap];0.80[JPT][hapmap];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9320682	0.85[ASN][1000 genomes]
rs9320683	0.85[ASN][1000 genomes]
rs9320684	0.83[CEU][hapmap];0.81[JPT][hapmap]
rs9385068	0.90[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs9398506	0.86[CHB][hapmap]
rs9401135	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9489625	0.88[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs9489627	0.85[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs9489628	0.85[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs9489637	0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9489654	0.81[EUR][1000 genomes]
rs980818	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs998194	1.00[CEU][hapmap];0.88[CHB][hapmap];0.81[JPT][hapmap];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025995	chr6:119407742-119709548	Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv886570	chr6:119450888-119600556	Strong transcription Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv1017507	chr6:119465981-119664949	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv1034992	chr6:119512657-119540895	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:119494600-119547400	Weak transcription	Esophagus	oesophagus
2	chr6:119498000-119536600	Weak transcription	Fetal Heart	heart
3	chr6:119503400-119539800	Weak transcription	Gastric	stomach
4	chr6:119519200-119558400	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr6:119524800-119537000	Weak transcription	Pancreas	Pancrea
6	chr6:119524800-119539000	Weak transcription	Primary T helper cells PMA-I stimulated	--
7	chr6:119524800-119558400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr6:119525000-119535200	Weak transcription	Ovary	ovary
9	chr6:119525400-119537000	Weak transcription	Right Ventricle	heart
10	chr6:119525400-119537400	Weak transcription	Brain Anterior Caudate	brain
11	chr6:119525400-119548600	Weak transcription	Aorta	Aorta
12	chr6:119525400-119556000	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr6:119525400-119558400	Weak transcription	Small Intestine	intestine
14	chr6:119525800-119537000	Weak transcription	Left Ventricle	heart
15	chr6:119525800-119554200	Weak transcription	Duodenum Mucosa	Duodenum
16	chr6:119525800-119555800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr6:119526000-119538800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chr6:119526000-119555200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr6:119526000-119558400	Weak transcription	Placenta	Placenta
20	chr6:119526200-119558400	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr6:119526600-119536400	Weak transcription	Fetal Intestine Large	intestine
22	chr6:119527600-119535200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
23	chr6:119527800-119536400	Weak transcription	Fetal Intestine Small	intestine
24	chr6:119528600-119551200	Weak transcription	Primary B cells from cord blood	blood
25	chr6:119530000-119537000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
26	chr6:119530000-119537200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr6:119530200-119536400	Weak transcription	Fetal Stomach	stomach
28	chr6:119531000-119536400	Weak transcription	Fetal Kidney	kidney
29	chr6:119531200-119552000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
30	chr6:119531400-119537200	Weak transcription	Right Atrium	heart
31	chr6:119531600-119535600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr6:119531600-119535800	Weak transcription	Adipose Nuclei	Adipose
33	chr6:119531600-119558400	Weak transcription	NHLF	lung
34	chr6:119532200-119535400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr6:119532200-119536400	Weak transcription	Duodenum Smooth Muscle	Duodenum
36	chr6:119532200-119537200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr6:119532600-119535600	Weak transcription	Liver	Liver
38	chr6:119532600-119535600	Weak transcription	Fetal Lung	lung
39	chr6:119532800-119535600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr6:119532800-119536600	Weak transcription	K562	blood
41	chr6:119534400-119536400	Weak transcription	Colon Smooth Muscle	Colon
42	chr6:119534600-119536400	Weak transcription	HepG2	liver
43	chr6:119534600-119536600	Weak transcription	Primary hematopoietic stem cells	blood
44	chr6:119534800-119536400	Weak transcription	Pancreatic Islets	Pancreatic Islet

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