Variant report

Variant	rs6934738
Chromosome Location	chr6:25093045-25093046
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs58774060	1.00[EUR][1000 genomes]
rs59000944	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6456646	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73386214	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73386265	0.87[AFR][1000 genomes]
rs73388144	1.00[EUR][1000 genomes]
rs7739547	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9461111	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022966	chr6:24763776-25154212	Flanking Active TSS Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv538160	chr6:24763776-25154212	Active TSS Strong transcription Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv1023989	chr6:24930362-25285679	Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
4	nsv830610	chr6:24951741-25124239	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
5	nsv830611	chr6:25039374-25199112	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
6	nsv470806	chr6:25082262-25156197	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv462662	chr6:25084718-25165486	Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	nsv601166	chr6:25084718-25165486	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:25080400-25098000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr6:25082200-25094800	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr6:25082600-25105200	Weak transcription	Duodenum Mucosa	Duodenum
4	chr6:25083800-25093200	Weak transcription	Colonic Mucosa	Colon
5	chr6:25084800-25099000	Weak transcription	Fetal Intestine Large	intestine
6	chr6:25084800-25113800	Weak transcription	Gastric	stomach
7	chr6:25085200-25108000	Weak transcription	Colon Smooth Muscle	Colon
8	chr6:25086200-25096400	Strong transcription	Thymus	Thymus
9	chr6:25086400-25099600	Strong transcription	Placenta	Placenta
10	chr6:25086600-25096600	Strong transcription	Rectal Mucosa Donor 29	rectum
11	chr6:25087000-25105400	Weak transcription	GM12878-XiMat	blood
12	chr6:25087400-25098200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr6:25087400-25101600	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr6:25087400-25113800	Strong transcription	Fetal Thymus	thymus
15	chr6:25087600-25105400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
16	chr6:25087600-25124800	Weak transcription	Small Intestine	intestine
17	chr6:25087800-25093400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
18	chr6:25087800-25097200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
19	chr6:25088000-25105800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
20	chr6:25088400-25096600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr6:25088400-25105400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
22	chr6:25088400-25113800	Strong transcription	Dnd41	blood
23	chr6:25088600-25098000	Strong transcription	Primary T cells fromperipheralblood	blood
24	chr6:25089200-25095000	Weak transcription	Spleen	Spleen
25	chr6:25089200-25106000	Weak transcription	Osteobl	bone
26	chr6:25089200-25108400	Weak transcription	HSMM	muscle
27	chr6:25089800-25103600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
28	chr6:25090000-25098200	Strong transcription	Primary T helper cells PMA-I stimulated	--
29	chr6:25090000-25098400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
30	chr6:25090200-25093200	Weak transcription	Left Ventricle	heart
31	chr6:25090200-25094800	Weak transcription	HUVEC	blood vessel
32	chr6:25090200-25095000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
33	chr6:25090200-25097600	Strong transcription	Primary T helper cells fromperipheralblood	blood
34	chr6:25090400-25095000	Weak transcription	Aorta	Aorta
35	chr6:25090400-25103600	Weak transcription	Sigmoid Colon	Sigmoid Colon
36	chr6:25090400-25105400	Weak transcription	Primary neutrophils fromperipheralblood	blood
37	chr6:25091200-25093600	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood
38	chr6:25091200-25094200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
39	chr6:25091400-25093800	Strong transcription	Primary hematopoietic stem cells	blood
40	chr6:25091400-25094200	Strong transcription	Stomach Smooth Muscle	stomach
41	chr6:25091400-25097600	Strong transcription	Monocytes-CD14+_RO01746	blood
42	chr6:25091600-25103600	Weak transcription	HSMMtube	muscle
43	chr6:25091600-25116000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
44	chr6:25091800-25093400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr6:25091800-25103600	Weak transcription	Psoas Muscle	Psoas
46	chr6:25091800-25127800	Weak transcription	Esophagus	oesophagus
47	chr6:25092000-25093400	Strong transcription	Rectal Smooth Muscle	rectum
48	chr6:25092200-25093200	Strong transcription	Primary B cells from cord blood	blood
49	chr6:25092200-25095200	Weak transcription	Liver	Liver
50	chr6:25092800-25098000	Strong transcription	Primary monocytes fromperipheralblood	blood

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