Variant report

Variant	rs6934818
Chromosome Location	chr6:35131773-35131774
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:35123069..35125917-chr6:35131448..35134859,3	K562	blood:
2	chr6:35131417..35136766-chr6:35169545..35174762,6	MCF-7	breast:
3	chr6:35127079..35138793-chr6:35145525..35157743,32	MCF-7	breast:
4	chr6:35119907..35121608-chr6:35130081..35132531,2	MCF-7	breast:
5	chr6:35115116..35116634-chr6:35129312..35132110,2	MCF-7	breast:
6	chr6:35129806..35132792-chr6:35197170..35199424,2	MCF-7	breast:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ANKS1A-1	chr6:35127447-35132003	ENSG00000244904

No data

Variant related genes	Relation type
ENSG00000124678	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs28522747	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4713840	0.91[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs55974914	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56154344	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6457807	0.88[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs6933979	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9366880	0.88[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs9368851	0.96[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9394278	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9394279	0.97[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9469953	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9469955	0.88[AMR][1000 genomes];0.97[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6934818	DEF6	cis	Whole Blood	GTEx

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35118600-35132200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr6:35128600-35133200	Weak transcription	Esophagus	oesophagus
3	chr6:35128600-35133800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr6:35128600-35137400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr6:35128800-35137400	Weak transcription	Brain Angular Gyrus	brain
6	chr6:35129200-35133200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr6:35130000-35133600	Weak transcription	Fetal Stomach	stomach
8	chr6:35130200-35133400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr6:35130200-35136000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr6:35130400-35132800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr6:35130400-35133200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr6:35130400-35133200	Weak transcription	Fetal Kidney	kidney
13	chr6:35130400-35134000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr6:35130600-35132200	Weak transcription	Stomach Mucosa	stomach
15	chr6:35130600-35132800	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr6:35130600-35132800	Weak transcription	Osteobl	bone
17	chr6:35130600-35133000	Weak transcription	NHDF-Ad	bronchial
18	chr6:35130600-35133200	Weak transcription	Adipose Nuclei	Adipose
19	chr6:35130600-35141400	Weak transcription	Brain Substantia Nigra	brain
20	chr6:35130800-35132000	Weak transcription	Fetal Lung	lung
21	chr6:35130800-35132600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr6:35130800-35132800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr6:35130800-35133400	Enhancers	HepG2	liver
24	chr6:35130800-35136200	Weak transcription	Left Ventricle	heart
25	chr6:35131000-35132200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr6:35131000-35133200	Weak transcription	Aorta	Aorta
27	chr6:35131000-35133200	Weak transcription	Pancreas	Pancrea
28	chr6:35131000-35137400	Weak transcription	Lung	lung
29	chr6:35131200-35133800	Weak transcription	Gastric	stomach
30	chr6:35131400-35131800	Weak transcription	Liver	Liver

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