Variant report

Variant	rs9469955
Chromosome Location	chr6:35142235-35142236
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:35141167..35143005-chr6:35157807..35160174,2	MCF-7	breast:
2	chr6:35139838..35142801-chr6:35145125..35146639,2	K562	blood:
3	chr6:35116846..35119289-chr6:35140930..35142825,2	MCF-7	breast:
4	chr6:35139023..35142448-chr6:35162991..35165848,3	MCF-7	breast:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs28522747	0.97[ASN][1000 genomes]
rs4713840	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs55974914	0.88[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs56154344	0.88[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs6457807	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6933979	0.88[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs6934818	0.88[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs9366880	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9368851	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9394278	0.96[ASN][1000 genomes]
rs9394279	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9469953	0.97[ASN][1000 genomes]

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35135000-35148800	Weak transcription	Esophagus	oesophagus
2	chr6:35137000-35148800	Weak transcription	Right Atrium	heart
3	chr6:35137600-35145200	Weak transcription	Fetal Kidney	kidney
4	chr6:35138000-35142400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr6:35139000-35146000	Weak transcription	NHLF	lung
6	chr6:35140200-35142400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr6:35141200-35142800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr6:35141400-35146000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr6:35141800-35145800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr6:35141800-35149200	Weak transcription	HUVEC	blood vessel
11	chr6:35142000-35144000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr6:35142000-35144000	Weak transcription	NHDF-Ad	bronchial
13	chr6:35142000-35145000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr6:35142000-35145000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr6:35142000-35145000	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr6:35142000-35145200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr6:35142000-35145200	Weak transcription	HSMM	muscle
18	chr6:35142000-35145200	Weak transcription	NH-A	brain
19	chr6:35142000-35145600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr6:35142000-35146400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr6:35142000-35146400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr6:35142000-35146800	Weak transcription	Left Ventricle	heart
23	chr6:35142000-35149000	Weak transcription	A549	lung
24	chr6:35142000-35149200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr6:35142000-35149600	Weak transcription	Spleen	Spleen
26	chr6:35142200-35143800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr6:35142200-35143800	Weak transcription	Osteobl	bone
28	chr6:35142200-35145400	Weak transcription	HSMMtube	muscle
29	chr6:35142200-35146400	Weak transcription	GM12878-XiMat	blood
30	chr6:35142200-35146800	Weak transcription	Fetal Heart	heart

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