Variant report

Variant	rs6934944
Chromosome Location	chr6:166829151-166829152
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:166825939..166829623-chr6:166829937..166832545,3	K562	blood:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs2235295	0.95[CEU][hapmap];0.93[EUR][1000 genomes]
rs2235296	0.95[CEU][hapmap];0.93[EUR][1000 genomes]
rs2235297	0.93[EUR][1000 genomes]
rs2984	0.85[CEU][hapmap];0.84[EUR][1000 genomes]
rs6925364	0.95[CEU][hapmap];0.87[CHB][hapmap];0.92[JPT][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6925920	0.95[CEU][hapmap];0.92[EUR][1000 genomes]
rs760670	0.95[CEU][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs909631	0.83[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3490076	chr6:166727901-167306743	Strong transcription Weak transcription Flanking Active TSS Genic enhancers Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases
2	esv3490077	chr6:166727901-167306743	Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases
3	esv3409504	chr6:166827362-166832060	Weak transcription Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:166797600-166835800	Weak transcription	Right Atrium	heart
2	chr6:166808200-166911800	Weak transcription	Psoas Muscle	Psoas
3	chr6:166814400-166837200	Weak transcription	Fetal Heart	heart
4	chr6:166816600-166833000	Weak transcription	HSMM	muscle
5	chr6:166816800-166832400	Weak transcription	NH-A	brain
6	chr6:166817200-166833800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr6:166820600-166829400	Weak transcription	HSMMtube	muscle
8	chr6:166821000-166832200	Weak transcription	Primary B cells from cord blood	blood
9	chr6:166821600-166829200	Weak transcription	Fetal Kidney	kidney
10	chr6:166821800-166829600	Strong transcription	Fetal Muscle Trunk	muscle
11	chr6:166821800-166833800	Weak transcription	Stomach Mucosa	stomach
12	chr6:166821800-166838600	Strong transcription	Muscle Satellite Cultured Cells	--
13	chr6:166822000-166833800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr6:166822000-166837200	Strong transcription	Fetal Stomach	stomach
15	chr6:166822000-166838200	Strong transcription	Cortex derived primary cultured neurospheres	brain
16	chr6:166822200-166830000	Strong transcription	Brain Cingulate Gyrus	brain
17	chr6:166822200-166836000	Weak transcription	Rectal Smooth Muscle	rectum
18	chr6:166822200-166837200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr6:166822200-166838600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr6:166822400-166838400	Strong transcription	Skeletal Muscle Male	skeletal muscle
21	chr6:166822400-166838600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr6:166822400-166838600	Strong transcription	Primary neutrophils fromperipheralblood	blood
23	chr6:166822600-166829400	Weak transcription	H9 Cell Line	embryonic stem cell
24	chr6:166822800-166829400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr6:166822800-166829400	Weak transcription	Fetal Brain Male	brain
26	chr6:166822800-166832000	Weak transcription	Aorta	Aorta
27	chr6:166822800-166832800	Weak transcription	Sigmoid Colon	Sigmoid Colon
28	chr6:166822800-166836200	Weak transcription	Ovary	ovary
29	chr6:166823000-166829400	Weak transcription	HUES6 Cell Line	embryonic stem cell
30	chr6:166823400-166829400	Weak transcription	Fetal Lung	lung
31	chr6:166823600-166829400	Weak transcription	Fetal Intestine Large	intestine
32	chr6:166823600-166832200	Weak transcription	Liver	Liver
33	chr6:166823600-166838000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr6:166823800-166829400	Weak transcription	Small Intestine	intestine
35	chr6:166823800-166833400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr6:166823800-166835000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
37	chr6:166823800-166836600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr6:166824000-166829400	Weak transcription	H1 Cell Line	embryonic stem cell
39	chr6:166824000-166829400	Weak transcription	HUES64 Cell Line	embryonic stem cell
40	chr6:166824000-166829400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
41	chr6:166824000-166829400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
42	chr6:166824000-166901400	Weak transcription	HUES48 Cell Line	embryonic stem cell
43	chr6:166824400-166836800	Weak transcription	Rectal Mucosa Donor 29	rectum
44	chr6:166824600-166844800	Weak transcription	Colon Smooth Muscle	Colon
45	chr6:166824800-166829600	Strong transcription	Left Ventricle	heart
46	chr6:166824800-166833400	Strong transcription	Brain Hippocampus Middle	brain
47	chr6:166825000-166830400	Strong transcription	NHLF	lung
48	chr6:166825000-166837600	Strong transcription	Adipose Nuclei	Adipose
49	chr6:166825000-166849200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr6:166825200-166853000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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