Variant report

Variant	rs6925920
Chromosome Location	chr6:166830978-166830979
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:166825939..166829623-chr6:166829937..166832545,3	K562	blood:
2	chr6:166829729..166831737-chr6:166835222..166837361,2	K562	blood:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10806849	0.93[ASN][1000 genomes]
rs2235295	0.92[CEU][hapmap];0.86[CHB][hapmap];0.89[CHD][hapmap];0.96[GIH][hapmap];0.86[MEX][hapmap];0.97[TSI][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2235296	0.92[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.96[GIH][hapmap];0.90[JPT][hapmap];0.86[MEX][hapmap];0.97[TSI][hapmap];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2235297	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2984	0.93[CHB][hapmap];0.92[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];0.93[MKK][hapmap];0.87[TSI][hapmap];0.93[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6904288	0.84[ASN][1000 genomes]
rs6925364	0.92[ASW][hapmap];1.00[CEU][hapmap];0.96[GIH][hapmap];0.90[LWK][hapmap];0.86[MEX][hapmap];0.93[MKK][hapmap];0.90[TSI][hapmap];0.83[YRI][hapmap];0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6934944	0.95[CEU][hapmap];0.92[EUR][1000 genomes]
rs760670	0.92[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.87[GIH][hapmap];0.90[JPT][hapmap];0.95[TSI][hapmap];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs909631	0.90[CEU][hapmap];0.81[CHD][hapmap];0.88[GIH][hapmap];0.82[TSI][hapmap];0.84[EUR][1000 genomes]
rs9348130	0.93[ASN][1000 genomes]
rs9355577	0.94[ASN][1000 genomes]
rs9355578	0.93[ASN][1000 genomes]
rs9459664	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3490076	chr6:166727901-167306743	Strong transcription Weak transcription Flanking Active TSS Genic enhancers Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases
2	esv3490077	chr6:166727901-167306743	Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases
3	esv3409504	chr6:166827362-166832060	Weak transcription Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv886937	chr6:166830696-166922813	Enhancers Weak transcription Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:166797600-166835800	Weak transcription	Right Atrium	heart
2	chr6:166808200-166911800	Weak transcription	Psoas Muscle	Psoas
3	chr6:166814400-166837200	Weak transcription	Fetal Heart	heart
4	chr6:166816600-166833000	Weak transcription	HSMM	muscle
5	chr6:166816800-166832400	Weak transcription	NH-A	brain
6	chr6:166817200-166833800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr6:166821000-166832200	Weak transcription	Primary B cells from cord blood	blood
8	chr6:166821800-166833800	Weak transcription	Stomach Mucosa	stomach
9	chr6:166821800-166838600	Strong transcription	Muscle Satellite Cultured Cells	--
10	chr6:166822000-166833800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr6:166822000-166837200	Strong transcription	Fetal Stomach	stomach
12	chr6:166822000-166838200	Strong transcription	Cortex derived primary cultured neurospheres	brain
13	chr6:166822200-166836000	Weak transcription	Rectal Smooth Muscle	rectum
14	chr6:166822200-166837200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr6:166822200-166838600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr6:166822400-166838400	Strong transcription	Skeletal Muscle Male	skeletal muscle
17	chr6:166822400-166838600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr6:166822400-166838600	Strong transcription	Primary neutrophils fromperipheralblood	blood
19	chr6:166822800-166832000	Weak transcription	Aorta	Aorta
20	chr6:166822800-166832800	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr6:166822800-166836200	Weak transcription	Ovary	ovary
22	chr6:166823600-166832200	Weak transcription	Liver	Liver
23	chr6:166823600-166838000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr6:166823800-166833400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr6:166823800-166835000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
26	chr6:166823800-166836600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr6:166824000-166901400	Weak transcription	HUES48 Cell Line	embryonic stem cell
28	chr6:166824400-166836800	Weak transcription	Rectal Mucosa Donor 29	rectum
29	chr6:166824600-166844800	Weak transcription	Colon Smooth Muscle	Colon
30	chr6:166824800-166833400	Strong transcription	Brain Hippocampus Middle	brain
31	chr6:166825000-166837600	Strong transcription	Adipose Nuclei	Adipose
32	chr6:166825000-166849200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr6:166825200-166853000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr6:166825200-166875800	Weak transcription	Colonic Mucosa	Colon
35	chr6:166825600-166833800	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
36	chr6:166825600-166835200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
37	chr6:166825800-166834200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
38	chr6:166825800-166834200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
39	chr6:166826000-166833400	Weak transcription	Rectal Mucosa Donor 31	rectum
40	chr6:166826000-166834400	Strong transcription	Brain Angular Gyrus	brain
41	chr6:166826200-166833600	Strong transcription	Brain Substantia Nigra	brain
42	chr6:166826400-166837600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr6:166826600-166848800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
44	chr6:166827000-166835000	Enhancers	Primary T helper cells fromperipheralblood	blood
45	chr6:166827000-166873400	Weak transcription	Placenta Amnion	Placenta Amnion
46	chr6:166827400-166832800	Weak transcription	Fetal Intestine Small	intestine
47	chr6:166827600-166831600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
48	chr6:166827600-166832400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr6:166827600-166833000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
50	chr6:166827600-166836200	Enhancers	Fetal Thymus	thymus

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