Variant report

Variant	rs9355578
Chromosome Location	chr6:166819774-166819775
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10806849	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2235295	0.92[CEU][hapmap];0.86[CHB][hapmap];0.86[CHD][hapmap];0.87[GIH][hapmap];0.86[MEX][hapmap];0.82[TSI][hapmap];0.81[ASN][1000 genomes]
rs2235296	0.92[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.82[TSI][hapmap];0.92[ASN][1000 genomes]
rs2235297	0.94[ASN][1000 genomes]
rs2984	0.88[CEU][hapmap];0.87[CHB][hapmap];0.89[CHD][hapmap];0.87[GIH][hapmap];0.82[JPT][hapmap];0.95[MEX][hapmap];0.87[TSI][hapmap];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6904288	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6925364	0.83[CEU][hapmap];0.87[GIH][hapmap];0.86[MEX][hapmap]
rs6925920	0.83[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.83[GIH][hapmap];0.90[JPT][hapmap];0.82[MEX][hapmap];0.93[ASN][1000 genomes]
rs6934944	0.85[CEU][hapmap]
rs760670	0.92[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.85[TSI][hapmap];0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs909631	0.91[CEU][hapmap];0.81[CHD][hapmap];0.88[GIH][hapmap];0.81[JPT][hapmap];0.87[TSI][hapmap];0.82[EUR][1000 genomes]
rs9348130	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9355577	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9459664	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3490076	chr6:166727901-167306743	Strong transcription Weak transcription Flanking Active TSS Genic enhancers Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases
2	esv3490077	chr6:166727901-167306743	Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases
3	nsv523548	chr6:166796433-166819774	Flanking Active TSS Weak transcription Active TSS Enhancers Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:166797600-166835800	Weak transcription	Right Atrium	heart
2	chr6:166802400-166822400	Weak transcription	Gastric	stomach
3	chr6:166804200-166822200	Weak transcription	Brain Angular Gyrus	brain
4	chr6:166808200-166911800	Weak transcription	Psoas Muscle	Psoas
5	chr6:166812200-166822200	Weak transcription	Brain Anterior Caudate	brain
6	chr6:166813000-166822400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr6:166813200-166822400	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr6:166814400-166822000	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr6:166814400-166822000	Weak transcription	Right Ventricle	heart
10	chr6:166814400-166822200	Weak transcription	Brain Germinal Matrix	brain
11	chr6:166814400-166824000	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr6:166814400-166837200	Weak transcription	Fetal Heart	heart
13	chr6:166814600-166824800	Weak transcription	Brain Hippocampus Middle	brain
14	chr6:166814800-166822200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr6:166815600-166822200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr6:166816400-166822400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr6:166816600-166823000	Weak transcription	Osteobl	bone
18	chr6:166816600-166827000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr6:166816600-166833000	Weak transcription	HSMM	muscle
20	chr6:166816800-166822000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr6:166816800-166822200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr6:166816800-166825000	Weak transcription	NHLF	lung
23	chr6:166816800-166832400	Weak transcription	NH-A	brain
24	chr6:166817000-166821800	Weak transcription	Muscle Satellite Cultured Cells	--
25	chr6:166817000-166823800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr6:166817000-166829000	Weak transcription	NHDF-Ad	bronchial
27	chr6:166817200-166833800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr6:166817400-166823600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr6:166819000-166820200	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr6:166819000-166820200	Bivalent Enhancer	HepG2	liver
31	chr6:166819200-166821800	Weak transcription	Fetal Muscle Trunk	muscle
32	chr6:166819200-166822600	Weak transcription	Fetal Intestine Small	intestine
33	chr6:166819400-166821800	Weak transcription	Lung	lung
34	chr6:166819400-166822400	Weak transcription	Left Ventricle	heart
35	chr6:166819600-166822400	Weak transcription	Fetal Muscle Leg	muscle

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